Analysis of interatomic Contacts of Structural Units in PDB entry:
8AGG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AGG entry

There is 1 chain in PDB entry 8AGG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 19ASN 565
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8AGG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 39Right-handed alpha
Helix 2
AA2
A
42 50Right-handed alpha
Helix 3
AA3
A
113 134Right-handed alpha
Helix 4
AA4
A
137 146Right-handed alpha
Helix 5
AA5
A
222 227Right-handed 310
Helix 6
AA6
A
253 258Right-handed alpha
Helix 7
AA7
A
277 284Right-handed alpha
Helix 8
AA8
A
285 289Right-handed 310
Helix 9
AA9
A
295 327Right-handed alpha
Helix 10
AB1
A
337 349Right-handed alpha
Helix 11
AB2
A
350 364Right-handed alpha
Helix 12
AB3
A
379 389Right-handed alpha
Helix 13
AB4
A
405 417Right-handed alpha
Helix 14
AB5
A
418 421Right-handed 310
Helix 15
AB6
A
424 432Right-handed alpha
Helix 16
AB7
A
434 447Right-handed alpha
Helix 17
AB8
A
468 486Right-handed alpha
Helix 18
AB9
A
495 509Right-handed alpha
Helix 19
AC1
A
513 515Right-handed 310
Helix 20
AC2
A
516 526Right-handed alpha
Helix 21
AC3
A
545 564Right-handed alpha
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There are 6 sheets in PDB entry 8AGG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
82 90anti-parallel
Strand 3
A
96 106anti-parallel
Strand 4
A
166 176anti-parallel
Strand 5
A
180 188anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
75 79anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 206first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
248 252anti-parallel
Strand 4
A
395 402anti-parallel
Strand 5
A
60 66anti-parallel
Strand 6
A
51 57anti-parallel
Strand 7
A
455 457anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
218 219anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 267first strand
Strand 2
A
272 276anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 450first strand
Strand 2
A
464 465anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il