Analysis of interatomic Contacts of Structural Units in PDB entry:
8AGY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AGY entry

There are 4 chains in PDB entry 8AGY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 13PRO 364
B
 GLY 5GLY 5
B
 SER 7SER 7
B
 LEU 9SER 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8AGY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 24Right-handed alpha
Helix 2
AA2
A
66 74Right-handed alpha
Helix 3
AA3
A
105 112Right-handed alpha
Helix 4
AA4
A
113 136Right-handed alpha
Helix 5
AA5
A
137 142Right-handed 310
Helix 6
AA6
A
143 148Right-handed alpha
Helix 7
AA7
A
148 171Right-handed alpha
Helix 8
AA8
A
178 191Right-handed alpha
Helix 9
AA9
A
193 195Right-handed 310
Helix 10
AB1
A
229 238Right-handed alpha
Helix 11
AB2
A
243 262Right-handed alpha
Helix 12
AB3
A
263 266Right-handed 310
Helix 13
AB4
A
267 297Right-handed alpha
Helix 14
AB5
A
308 326Right-handed alpha
Helix 15
AB6
A
330 347Right-handed alpha
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There are 4 sheets in PDB entry 8AGY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 35first strand
Strand 2
A
39 45anti-parallel
Strand 3
A
51 57anti-parallel
Strand 4
A
94 98anti-parallel
Strand 5
A
85 88anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
209 212anti-parallel
Strand 3
A
215 218anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 200first strand
Strand 2
A
225 228anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
306 307anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il