Analysis of interatomic Contacts of Structural Units in PDB entry:
8AH3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AH3 entry

There is 1 chain in PDB entry 8AH3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 26PRO 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8AH3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 37Right-handed alpha
Helix 2
AA2
A
118 122Right-handed alpha
Helix 3
AA3
A
210 214Right-handed 310
Helix 4
AA4
A
275 280Right-handed alpha
Helix 5
AA5
A
334 338Right-handed 310
Helix 6
AA6
A
373 388Right-handed alpha
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There are 5 sheets in PDB entry 8AH3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
171 183anti-parallel
Strand 3
A
78 89anti-parallel
Strand 4
A
146 149anti-parallel
Strand 5
A
137 140anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
171 183anti-parallel
Strand 3
A
78 89anti-parallel
Strand 4
A
153 155anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 75first strand
Strand 2
A
159 165anti-parallel
Strand 3
A
100 106anti-parallel
Strand 4
A
114 117anti-parallel
Strand 5
A
192 201parallel
Strand 6
A
342 351anti-parallel
Strand 7
A
237 248anti-parallel
Strand 8
A
308 315anti-parallel
Strand 9
A
295 299anti-parallel
Strand 10
A
290 291anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 75first strand
Strand 2
A
159 165anti-parallel
Strand 3
A
100 106anti-parallel
Strand 4
A
114 117anti-parallel
Strand 5
A
192 201parallel
Strand 6
A
342 351anti-parallel
Strand 7
A
237 248anti-parallel
Strand 8
A
321 323anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 234first strand
Strand 2
A
326 331anti-parallel
Strand 3
A
259 263anti-parallel
Strand 4
A
271 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il