Analysis of interatomic Contacts of Structural Units in PDB entry:
8AHD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AHD entry

There are 2 chains in PDB entry 8AHD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 14PRO 364
B
 VAL 13ARG 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8AHD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 24Right-handed alpha
Helix 2
AA2
A
67 75Right-handed alpha
Helix 3
AA3
A
105 112Right-handed alpha
Helix 4
AA4
A
113 136Right-handed alpha
Helix 5
AA5
A
137 142Right-handed 310
Helix 6
AA6
A
143 148Right-handed alpha
Helix 7
AA7
A
148 171Right-handed alpha
Helix 8
AA8
A
178 191Right-handed alpha
Helix 9
AA9
A
193 195Right-handed 310
Helix 10
AB1
A
229 238Right-handed alpha
Helix 11
AB2
A
243 262Right-handed alpha
Helix 12
AB3
A
263 266Right-handed 310
Helix 13
AB4
A
267 297Right-handed alpha
Helix 14
AB5
A
308 326Right-handed alpha
Helix 15
AB6
A
330 348Right-handed alpha
Helix 16
AB7
B
14 24Right-handed alpha
Helix 17
AB8
B
67 75Right-handed alpha
Helix 18
AB9
B
105 112Right-handed alpha
Helix 19
AC1
B
113 136Right-handed alpha
Helix 20
AC2
B
137 142Right-handed 310
Helix 21
AC3
B
143 148Right-handed alpha
Helix 22
AC4
B
148 171Right-handed alpha
Helix 23
AC5
B
178 191Right-handed alpha
Helix 24
AC6
B
193 195Right-handed 310
Helix 25
AC7
B
229 238Right-handed alpha
Helix 26
AC8
B
243 260Right-handed alpha
Helix 27
AC9
B
261 266Right-handed 310
Helix 28
AD1
B
267 297Right-handed alpha
Helix 29
AD2
B
308 326Right-handed alpha
Helix 30
AD3
B
330 348Right-handed alpha
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There are 8 sheets in PDB entry 8AHD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
40 45anti-parallel
Strand 3
A
51 56anti-parallel
Strand 4
A
94 98anti-parallel
Strand 5
A
85 88anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
209 212anti-parallel
Strand 3
A
215 218anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 200first strand
Strand 2
A
225 228anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
306 307anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
41 45anti-parallel
Strand 3
B
51 55anti-parallel
Strand 4
B
95 98anti-parallel
Strand 5
B
85 88anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
209 212anti-parallel
Strand 3
B
215 218anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 200first strand
Strand 2
B
225 228anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 303first strand
Strand 2
B
306 307anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il