Analysis of interatomic Contacts of Structural Units in PDB entry:
8AHF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AHF entry

There are 2 chains in PDB entry 8AHF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3LYS 371
B
 GLU 3LYS 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8AHF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 28Right-handed alpha
Helix 2
AA2
A
45 56Right-handed alpha
Helix 3
AA3
A
71 91Right-handed alpha
Helix 4
AA4
A
101 114Right-handed alpha
Helix 5
AA5
A
135 147Right-handed alpha
Helix 6
AA6
A
154 164Right-handed alpha
Helix 7
AA7
A
167 169Right-handed 310
Helix 8
AA8
A
176 186Right-handed alpha
Helix 9
AA9
A
192 199Right-handed alpha
Helix 10
AB1
A
209 214Right-handed alpha
Helix 11
AB2
A
215 232Right-handed alpha
Helix 12
AB3
A
244 256Right-handed alpha
Helix 13
AB4
A
268 277Right-handed alpha
Helix 14
AB5
A
286 293Right-handed alpha
Helix 15
AB6
A
294 297Right-handed 310
Helix 16
AB7
A
309 315Right-handed alpha
Helix 17
AB8
A
324 338Right-handed alpha
Helix 18
AB9
A
338 348Right-handed alpha
Helix 19
AC1
A
356 369Right-handed alpha
Helix 20
AC2
B
15 28Right-handed alpha
Helix 21
AC3
B
45 55Right-handed alpha
Helix 22
AC4
B
71 91Right-handed alpha
Helix 23
AC5
B
101 113Right-handed alpha
Helix 24
AC6
B
135 147Right-handed alpha
Helix 25
AC7
B
154 164Right-handed alpha
Helix 26
AC8
B
167 169Right-handed 310
Helix 27
AC9
B
176 186Right-handed alpha
Helix 28
AD1
B
192 198Right-handed alpha
Helix 29
AD2
B
210 214Right-handed 310
Helix 30
AD3
B
215 232Right-handed alpha
Helix 31
AD4
B
244 256Right-handed alpha
Helix 32
AD5
B
268 277Right-handed alpha
Helix 33
AD6
B
286 293Right-handed alpha
Helix 34
AD7
B
294 297Right-handed 310
Helix 35
AD8
B
309 315Right-handed alpha
Helix 36
AD9
B
324 338Right-handed alpha
Helix 37
AE1
B
338 348Right-handed alpha
Helix 38
AE2
B
356 369Right-handed alpha
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There are 4 sheets in PDB entry 8AHF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
34 40parallel
Strand 3
A
5 11parallel
Strand 4
A
94 98parallel
Strand 5
A
118 121parallel
Strand 6
A
149 152parallel
Strand 7
A
171 173parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 264first strand
Strand 2
A
235 240parallel
Strand 3
A
202 206parallel
Strand 4
A
281 284parallel
Strand 5
A
300 302parallel
Strand 6
A
318 320parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 62first strand
Strand 2
B
34 40parallel
Strand 3
B
5 11parallel
Strand 4
B
94 98parallel
Strand 5
B
118 121parallel
Strand 6
B
149 152parallel
Strand 7
B
171 173parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 264first strand
Strand 2
B
235 240parallel
Strand 3
B
202 207parallel
Strand 4
B
281 284parallel
Strand 5
B
300 302parallel
Strand 6
B
318 320parallel
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