Analysis of interatomic Contacts of Structural Units in PDB entry:
8AIC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AIC entry

There are 2 chains in PDB entry 8AIC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 218ASP 554
B
 ARG 218PRO 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8AIC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
220 233Right-handed alpha
Helix 2
AA2
A
260 264Right-handed 310
Helix 3
AA3
A
270 276Right-handed 310
Helix 4
AA4
A
289 294Right-handed alpha
Helix 5
AA5
A
304 308Right-handed 310
Helix 6
AA6
A
332 347Right-handed alpha
Helix 7
AA7
A
355 358Right-handed 310
Helix 8
AA8
A
377 382Right-handed alpha
Helix 9
AA9
A
382 390Right-handed alpha
Helix 10
AB1
A
401 405Right-handed 310
Helix 11
AB2
A
409 414Right-handed alpha
Helix 12
AB3
A
468 475Right-handed alpha
Helix 13
AB4
A
499 511Right-handed alpha
Helix 14
AB5
A
511 524Right-handed alpha
Helix 15
AB6
A
529 533Right-handed 310
Helix 16
AB7
B
220 233Right-handed alpha
Helix 17
AB8
B
260 264Right-handed 310
Helix 18
AB9
B
270 276Right-handed 310
Helix 19
AC1
B
289 294Right-handed alpha
Helix 20
AC2
B
304 308Right-handed 310
Helix 21
AC3
B
332 347Right-handed alpha
Helix 22
AC4
B
355 358Right-handed 310
Helix 23
AC5
B
377 382Right-handed alpha
Helix 24
AC6
B
382 390Right-handed alpha
Helix 25
AC7
B
401 405Right-handed 310
Helix 26
AC8
B
409 414Right-handed alpha
Helix 27
AC9
B
415 418Right-handed 310
Helix 28
AD1
B
468 475Right-handed alpha
Helix 29
AD2
B
499 511Right-handed alpha
Helix 30
AD3
B
511 523Right-handed alpha
Helix 31
AD4
B
529 533Right-handed 310
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There are 10 sheets in PDB entry 8AIC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 498first strand
Strand 2
A
235 239anti-parallel
Strand 3
A
314 318anti-parallel
Strand 4
A
539 542anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
301 302anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
454 457anti-parallel
Strand 3
A
443 445anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 349first strand
Strand 2
A
352 353anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
486 488anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
495 498first strand
Strand 2
B
235 239anti-parallel
Strand 3
B
314 318anti-parallel
Strand 4
B
539 542anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 251first strand
Strand 2
B
301 302anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 283first strand
Strand 2
B
454 457anti-parallel
Strand 3
B
443 445anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 349first strand
Strand 2
B
352 353anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 394first strand
Strand 2
B
486 488anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il