Analysis of interatomic Contacts of Structural Units in PDB entry:
8AIF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AIF entry

There are 3 chains in PDB entry 8AIF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 72ASP 189
B
 ASP 71GLU 190
C
 ASP 71CYS 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8AIF

There are 9 sheets in PDB entry 8AIF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 84first strand
Strand 2
A
98 103anti-parallel
Strand 3
A
146 150anti-parallel
Strand 4
A
140 143anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 137first strand
Strand 2
A
114 119anti-parallel
Strand 3
A
158 165anti-parallel
Strand 4
A
177 179anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 137first strand
Strand 2
A
114 119anti-parallel
Strand 3
A
158 165anti-parallel
Strand 4
A
183 185anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 84first strand
Strand 2
B
98 103anti-parallel
Strand 3
B
146 150anti-parallel
Strand 4
B
140 143anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
183 186parallel
Strand 3
B
158 165anti-parallel
Strand 4
B
114 120anti-parallel
Strand 5
B
131 137anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
183 186parallel
Strand 3
B
158 165anti-parallel
Strand 4
B
177 179anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 84first strand
Strand 2
C
98 103anti-parallel
Strand 3
C
146 150anti-parallel
Strand 4
C
140 143anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 137first strand
Strand 2
C
114 120anti-parallel
Strand 3
C
158 165anti-parallel
Strand 4
C
177 179anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 137first strand
Strand 2
C
114 120anti-parallel
Strand 3
C
158 165anti-parallel
Strand 4
C
183 185anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il