Analysis of interatomic Contacts of Structural Units in PDB entry:
8AIK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AIK entry

There are 2 chains in PDB entry 8AIK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 75GLY 394
B
 ASN 72LYS 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8AIK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 87Right-handed alpha
Helix 2
AA2
A
129 144Right-handed alpha
Helix 3
AA3
A
152 156Right-handed 310
Helix 4
AA4
A
167 174Right-handed alpha
Helix 5
AA5
A
189 201Right-handed alpha
Helix 6
AA6
A
205 208Right-handed 310
Helix 7
AA7
A
215 230Right-handed alpha
Helix 8
AA8
A
232 241Right-handed alpha
Helix 9
AA9
A
254 256Right-handed 310
Helix 10
AB1
A
283 290Right-handed alpha
Helix 11
AB2
A
299 312Right-handed alpha
Helix 12
AB3
A
317 325Right-handed alpha
Helix 13
AB4
A
375 378Right-handed 310
Helix 14
AB5
A
379 394Right-handed alpha
Helix 15
AB6
B
73 87Right-handed alpha
Helix 16
AB7
B
129 144Right-handed alpha
Helix 17
AB8
B
152 156Right-handed 310
Helix 18
AB9
B
167 173Right-handed alpha
Helix 19
AC1
B
189 201Right-handed alpha
Helix 20
AC2
B
205 208Right-handed 310
Helix 21
AC3
B
215 230Right-handed alpha
Helix 22
AC4
B
232 241Right-handed alpha
Helix 23
AC5
B
241 246Right-handed alpha
Helix 24
AC6
B
254 256Right-handed 310
Helix 25
AC7
B
283 290Right-handed alpha
Helix 26
AC8
B
299 312Right-handed alpha
Helix 27
AC9
B
317 325Right-handed alpha
Helix 28
AD1
B
375 379Right-handed 310
Helix 29
AD2
B
380 392Right-handed alpha
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There are 8 sheets in PDB entry 8AIK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 107first strand
Strand 2
A
91 97anti-parallel
Strand 3
A
366 371anti-parallel
Strand 4
A
353 359anti-parallel
Strand 5
A
343 350anti-parallel
Strand 6
A
337 340anti-parallel
Strand 7
A
333 334anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 111first strand
Strand 2
A
116 117anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
296 298anti-parallel
Strand 3
A
251 252anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
202 203anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 107first strand
Strand 2
B
91 97anti-parallel
Strand 3
B
366 371anti-parallel
Strand 4
B
353 359anti-parallel
Strand 5
B
343 350anti-parallel
Strand 6
B
337 340anti-parallel
Strand 7
B
333 334anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 111first strand
Strand 2
B
116 117anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
296 298anti-parallel
Strand 3
B
251 252anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
202 203anti-parallel
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