Analysis of interatomic Contacts of Structural Units in PDB entry:
8AIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AIM entry

There are 4 chains in PDB entry 8AIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 3SER 88
G
 LYS 3SER 88
A
 MET 1GLU 215
E
 MET 1SER 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8AIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
4 17Right-handed alpha
Helix 2
AA2
B
29 38Right-handed alpha
Helix 3
AA3
G
4 17Right-handed alpha
Helix 4
AA4
G
29 38Right-handed alpha
Helix 5
AA5
A
2 14Right-handed alpha
Helix 6
AA6
A
16 30Right-handed alpha
Helix 7
AA7
A
35 39Right-handed 310
Helix 8
AA8
A
40 46Right-handed alpha
Helix 9
AA9
A
47 51Right-handed 310
Helix 10
AB1
A
81 95Right-handed alpha
Helix 11
AB2
A
104 111Right-handed alpha
Helix 12
AB3
A
133 149Right-handed alpha
Helix 13
AB4
A
158 163Right-handed alpha
Helix 14
AB5
A
164 168Right-handed 310
Helix 15
AB6
A
194 206Right-handed alpha
Helix 16
AB7
E
2 12Right-handed alpha
Helix 17
AB8
E
16 30Right-handed alpha
Helix 18
AB9
E
35 39Right-handed 310
Helix 19
AC1
E
40 46Right-handed alpha
Helix 20
AC2
E
47 51Right-handed 310
Helix 21
AC3
E
81 95Right-handed alpha
Helix 22
AC4
E
104 111Right-handed alpha
Helix 23
AC5
E
133 149Right-handed alpha
Helix 24
AC6
E
158 163Right-handed alpha
Helix 25
AC7
E
164 168Right-handed 310
Helix 26
AC8
E
194 206Right-handed alpha
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There are 6 sheets in PDB entry 8AIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 28first strand
Strand 2
B
45 51anti-parallel
Strand 3
B
57 62anti-parallel
Strand 4
B
70 76anti-parallel
Strand 5
B
81 86anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
24 28first strand
Strand 2
G
45 51anti-parallel
Strand 3
G
57 62anti-parallel
Strand 4
G
70 76anti-parallel
Strand 5
G
81 85anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
121 122anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
53 57parallel
Strand 3
A
153 157parallel
Strand 4
A
174 178parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
32 33first strand
Strand 2
E
121 122anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
112 116first strand
Strand 2
E
53 57parallel
Strand 3
E
153 157parallel
Strand 4
E
174 178parallel
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