Analysis of interatomic Contacts of Structural Units in PDB entry:
8AIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AIN entry

There are 2 chains in PDB entry 8AIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 215
B
 LYS 2VAL 117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 8AIN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 14Right-handed alpha
Helix 2
AA2
A
16 30Right-handed alpha
Helix 3
AA3
A
35 39Right-handed 310
Helix 4
AA4
A
40 46Right-handed alpha
Helix 5
AA5
A
47 51Right-handed 310
Helix 6
AA6
A
81 95Right-handed alpha
Helix 7
AA7
A
104 110Right-handed alpha
Helix 8
AA8
A
133 149Right-handed alpha
Helix 9
AA9
A
158 163Right-handed alpha
Helix 10
AB1
A
164 168Right-handed 310
Helix 11
AB2
A
194 206Right-handed alpha
Helix 12
AB3
B
3 15Right-handed alpha
Helix 13
AB4
B
33 35Right-handed 310
Helix 14
AB5
B
43 47Right-handed 310
Helix 15
AB6
B
111 116Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8AIN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
121 122anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
53 56parallel
Strand 3
A
153 157parallel
Strand 4
A
174 178parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 31first strand
Strand 2
B
50 57anti-parallel
Strand 3
B
67 73anti-parallel
Strand 4
B
76 84anti-parallel
Strand 5
B
87 94anti-parallel
Strand 6
B
99 102anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il