Analysis of interatomic Contacts of Structural Units in PDB entry:
8AIS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AIS entry

There are 3 chains in PDB entry 8AIS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 40GLU 304
B
 ASN 37GLU 304
C
 ASN 37GLU 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8AIS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 55Right-handed alpha
Helix 2
AA2
A
68 72Right-handed 310
Helix 3
AA3
A
107 114Right-handed alpha
Helix 4
AA4
A
130 149Right-handed alpha
Helix 5
AA5
A
172 182Right-handed alpha
Helix 6
AA6
A
223 231Right-handed alpha
Helix 7
AA7
A
256 273Right-handed alpha
Helix 8
AA8
A
275 277Right-handed 310
Helix 9
AA9
A
278 283Right-handed alpha
Helix 10
AB1
A
286 290Right-handed 310
Helix 11
AB2
B
49 55Right-handed alpha
Helix 12
AB3
B
107 114Right-handed alpha
Helix 13
AB4
B
130 149Right-handed alpha
Helix 14
AB5
B
172 182Right-handed alpha
Helix 15
AB6
B
223 231Right-handed alpha
Helix 16
AB7
B
256 273Right-handed alpha
Helix 17
AB8
B
275 277Right-handed 310
Helix 18
AB9
B
278 283Right-handed alpha
Helix 19
AC1
B
286 290Right-handed 310
Helix 20
AC2
C
49 55Right-handed alpha
Helix 21
AC3
C
107 114Right-handed alpha
Helix 22
AC4
C
130 149Right-handed alpha
Helix 23
AC5
C
172 182Right-handed alpha
Helix 24
AC6
C
223 231Right-handed alpha
Helix 25
AC7
C
256 273Right-handed alpha
Helix 26
AC8
C
275 277Right-handed 310
Helix 27
AC9
C
278 283Right-handed alpha
Helix 28
AD1
C
286 290Right-handed 310
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There are 6 sheets in PDB entry 8AIS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 67first strand
Strand 2
A
77 82anti-parallel
Strand 3
A
118 122anti-parallel
Strand 4
A
89 97parallel
Strand 5
A
160 171parallel
Strand 6
A
188 192parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 212first strand
Strand 2
A
237 242parallel
Strand 3
A
293 298anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 67first strand
Strand 2
B
77 82anti-parallel
Strand 3
B
118 122anti-parallel
Strand 4
B
89 97parallel
Strand 5
B
160 171parallel
Strand 6
B
188 192parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 212first strand
Strand 2
B
237 242parallel
Strand 3
B
293 298anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 67first strand
Strand 2
C
77 82anti-parallel
Strand 3
C
118 122anti-parallel
Strand 4
C
89 97parallel
Strand 5
C
160 171parallel
Strand 6
C
188 192parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
207 212first strand
Strand 2
C
237 242parallel
Strand 3
C
293 298anti-parallel
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