Analysis of interatomic Contacts of Structural Units in PDB entry:
8AIX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AIX entry

There are 24 chains in PDB entry 8AIX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 358	LEU 441
B	ALA 358	GLN 442
D	GLU 1	SER 887
G	SER 34	LEU 216
H	ILE 38	LEU 216
K	VAL 55	ASP 126
L	ILE 45	ARG 128
M	LEU 297	MET 443
N	GLU 288	MET 443
J	VAL 2	SER 887
C	VAL 2	THR 885
I	GLU 1	SER 887
E	ALA 358	LEU 441
F	ALA 358	GLN 442
P	GLU 1	SER 887
Q	SER 34	LEU 216
R	ILE 38	LEU 216
U	VAL 55	ASP 126
V	ILE 45	ARG 128
W	LEU 297	MET 443
X	GLU 288	MET 443
T	VAL 2	SER 887
O	VAL 2	THR 885
S	GLU 1	SER 887

There are 52 helices in PDB entry 8AIX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	358	436	Right-handed alpha
Helix 2	AA2	A	437	439	Right-handed 310
Helix 3	AA3	B	359	439	Right-handed alpha
Helix 4	AA4	D	834	837	Right-handed 310
Helix 5	AA5	D	859	863	Right-handed 310
Helix 6	AA6	G	35	60	Right-handed alpha
Helix 7	AA7	G	61	66	Right-handed alpha
Helix 8	AA8	G	74	94	Right-handed alpha
Helix 9	AA9	G	96	160	Right-handed alpha
Helix 10	AB1	G	160	215	Right-handed alpha
Helix 11	AB2	H	39	68	Right-handed alpha
Helix 12	AB3	H	70	86	Right-handed alpha
Helix 13	AB4	H	86	160	Right-handed alpha
Helix 14	AB5	H	160	215	Right-handed alpha
Helix 15	AB6	K	58	88	Right-handed alpha
Helix 16	AB7	K	89	91	Right-handed 310
Helix 17	AB8	K	92	126	Right-handed alpha
Helix 18	AB9	L	46	60	Right-handed alpha
Helix 19	AC1	L	62	128	Right-handed alpha
Helix 20	AC2	M	298	442	Right-handed alpha
Helix 21	AC3	N	289	443	Right-handed alpha
Helix 22	AC4	J	833	837	Right-handed 310
Helix 23	AC5	J	859	863	Right-handed 310
Helix 24	AC6	C	834	837	Right-handed 310
Helix 25	AC7	C	859	863	Right-handed 310
Helix 26	AC8	I	846	849	Right-handed 310
Helix 27	AC9	E	359	436	Right-handed alpha
Helix 28	AD1	E	437	439	Right-handed 310
Helix 29	AD2	F	359	439	Right-handed alpha
Helix 30	AD3	P	834	837	Right-handed 310
Helix 31	AD4	P	859	863	Right-handed 310
Helix 32	AD5	Q	35	60	Right-handed alpha
Helix 33	AD6	Q	61	66	Right-handed alpha
Helix 34	AD7	Q	74	94	Right-handed alpha
Helix 35	AD8	Q	96	160	Right-handed alpha
Helix 36	AD9	Q	160	215	Right-handed alpha
Helix 37	AE1	R	39	68	Right-handed alpha
Helix 38	AE2	R	70	86	Right-handed alpha
Helix 39	AE3	R	86	160	Right-handed alpha
Helix 40	AE4	R	160	215	Right-handed alpha
Helix 41	AE5	U	58	88	Right-handed alpha
Helix 42	AE6	U	89	91	Right-handed 310
Helix 43	AE7	U	92	126	Right-handed alpha
Helix 44	AE8	V	46	60	Right-handed alpha
Helix 45	AE9	V	62	128	Right-handed alpha
Helix 46	AF1	W	298	442	Right-handed alpha
Helix 47	AF2	X	289	443	Right-handed alpha
Helix 48	AF3	T	833	837	Right-handed 310
Helix 49	AF4	T	859	863	Right-handed 310
Helix 50	AF5	O	834	837	Right-handed 310
Helix 51	AF6	O	859	863	Right-handed 310
Helix 52	AF7	S	846	849	Right-handed 310

There are 22 sheets in PDB entry 8AIX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	794	797	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	831	832	first strand
Strand 2	D	819	824	anti-parallel
Strand 3	D	807	811	anti-parallel
Strand 4	D	869	872	anti-parallel
Strand 5	D	875	878	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	864	866	first strand
Strand 2	D	882	884	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	5	first strand
Strand 2	J	796	797	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	819	824	first strand
Strand 2	J	807	812	anti-parallel
Strand 3	J	865	872	anti-parallel
Strand 4	J	875	876	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	840	843	first strand
Strand 2	J	852	855	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	794	795	first strand
Strand 2	C	851	853	anti-parallel
Strand 3	C	842	843	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	832	first strand
Strand 2	C	818	824	anti-parallel
Strand 3	C	805	812	anti-parallel
Strand 4	C	865	871	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	822	824	first strand
Strand 2	I	807	810	anti-parallel
Strand 3	I	864	872	anti-parallel
Strand 4	I	875	877	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	822	824	first strand
Strand 2	I	807	810	anti-parallel
Strand 3	I	864	872	anti-parallel
Strand 4	I	882	884	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	840	845	first strand
Strand 2	I	850	855	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	4	7	first strand
Strand 2	P	794	797	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	831	832	first strand
Strand 2	P	819	824	anti-parallel
Strand 3	P	807	811	anti-parallel
Strand 4	P	869	872	anti-parallel
Strand 5	P	875	878	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	864	866	first strand
Strand 2	P	882	884	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	4	5	first strand
Strand 2	T	796	797	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	819	824	first strand
Strand 2	T	807	812	anti-parallel
Strand 3	T	865	872	anti-parallel
Strand 4	T	875	876	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	840	843	first strand
Strand 2	T	852	855	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	794	795	first strand
Strand 2	O	851	853	anti-parallel
Strand 3	O	842	843	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	830	832	first strand
Strand 2	O	818	824	anti-parallel
Strand 3	O	805	812	anti-parallel
Strand 4	O	865	871	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	822	824	first strand
Strand 2	S	807	810	anti-parallel
Strand 3	S	864	872	anti-parallel
Strand 4	S	875	877	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	822	824	first strand
Strand 2	S	807	810	anti-parallel
Strand 3	S	864	872	anti-parallel
Strand 4	S	882	884	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	840	845	first strand
Strand 2	S	850	855	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AIX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AIX