Analysis of interatomic Contacts of Structural Units in PDB entry:
8AJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AJ2 entry

There are 2 chains in PDB entry 8AJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 12ARG 245
B
 ASN 12PRO 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8AJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 33Right-handed alpha
Helix 2
AA2
A
33 39Right-handed alpha
Helix 3
AA3
A
45 57Right-handed alpha
Helix 4
AA4
A
61 69Right-handed alpha
Helix 5
AA5
A
94 110Right-handed alpha
Helix 6
AA6
A
179 194Right-handed alpha
Helix 7
AA7
A
225 242Right-handed alpha
Helix 8
AA8
B
14 33Right-handed alpha
Helix 9
AA9
B
33 39Right-handed alpha
Helix 10
AB1
B
45 57Right-handed alpha
Helix 11
AB2
B
61 69Right-handed alpha
Helix 12
AB3
B
94 115Right-handed alpha
Helix 13
AB4
B
179 193Right-handed alpha
Helix 14
AB5
B
225 240Right-handed alpha
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There are 4 sheets in PDB entry 8AJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
172 177parallel
Strand 3
A
162 167anti-parallel
Strand 4
A
146 151anti-parallel
Strand 5
A
136 141anti-parallel
Strand 6
A
85 92anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
212 215anti-parallel
Strand 3
A
223 224anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
136 141anti-parallel
Strand 3
B
146 151anti-parallel
Strand 4
B
162 167anti-parallel
Strand 5
B
172 177anti-parallel
Strand 6
B
120 122parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 199first strand
Strand 2
B
211 215anti-parallel
Strand 3
B
223 224anti-parallel
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