Analysis of interatomic Contacts of Structural Units in PDB entry:
8AJA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AJA entry

There are 3 chains in PDB entry 8AJA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 19	ASP 1116
B	THR 19	ASP 1116
C	THR 19	ASP 1116

There are 88 helices in PDB entry 8AJA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	76	79	Right-handed 310
Helix 2	AA2	A	286	295	Right-handed alpha
Helix 3	AA3	A	329	335	Right-handed alpha
Helix 4	AA4	A	341	345	Right-handed 310
Helix 5	AA5	A	356	361	Right-handed 310
Helix 6	AA6	A	375	381	Right-handed 310
Helix 7	AA7	A	397	402	Right-handed 310
Helix 8	AA8	A	408	414	Right-handed alpha
Helix 9	AA9	A	476	479	Right-handed 310
Helix 10	AB1	A	593	598	Right-handed alpha
Helix 11	AB2	A	604	609	Right-handed alpha
Helix 12	AB3	A	610	612	Right-handed 310
Helix 13	AB4	A	707	714	Right-handed alpha
Helix 14	AB5	A	716	724	Right-handed alpha
Helix 15	AB6	A	725	727	Right-handed 310
Helix 16	AB7	A	728	752	Right-handed alpha
Helix 17	AB8	A	773	775	Right-handed 310
Helix 18	AB9	A	786	796	Right-handed alpha
Helix 19	AC1	A	813	817	Right-handed 310
Helix 20	AC2	A	818	826	Right-handed alpha
Helix 21	AC3	A	836	855	Right-handed alpha
Helix 22	AC4	A	856	861	Right-handed alpha
Helix 23	AC5	A	867	880	Right-handed alpha
Helix 24	AC6	A	882	888	Right-handed alpha
Helix 25	AC7	A	889	911	Right-handed alpha
Helix 26	AC8	A	912	914	Right-handed 310
Helix 27	AC9	A	915	935	Right-handed alpha
Helix 28	AD1	A	936	938	Right-handed 310
Helix 29	AD2	A	946	954	Right-handed alpha
Helix 30	AD3	A	955	1003	Right-handed alpha
Helix 31	AD4	A	1111	1115	Right-handed 310
Helix 32	AD5	B	286	295	Right-handed alpha
Helix 33	AD6	B	329	335	Right-handed alpha
Helix 34	AD7	B	341	345	Right-handed 310
Helix 35	AD8	B	356	361	Right-handed 310
Helix 36	AD9	B	375	381	Right-handed 310
Helix 37	AE1	B	397	402	Right-handed 310
Helix 38	AE2	B	408	414	Right-handed alpha
Helix 39	AE3	B	476	479	Right-handed 310
Helix 40	AE4	B	593	598	Right-handed alpha
Helix 41	AE5	B	604	609	Right-handed alpha
Helix 42	AE6	B	610	612	Right-handed 310
Helix 43	AE7	B	707	714	Right-handed alpha
Helix 44	AE8	B	716	724	Right-handed alpha
Helix 45	AE9	B	725	727	Right-handed 310
Helix 46	AF1	B	728	753	Right-handed alpha
Helix 47	AF2	B	786	796	Right-handed alpha
Helix 48	AF3	B	813	817	Right-handed 310
Helix 49	AF4	B	818	826	Right-handed alpha
Helix 50	AF5	B	836	855	Right-handed alpha
Helix 51	AF6	B	856	861	Right-handed alpha
Helix 52	AF7	B	867	879	Right-handed alpha
Helix 53	AF8	B	882	888	Right-handed alpha
Helix 54	AF9	B	889	911	Right-handed alpha
Helix 55	AG1	B	912	914	Right-handed 310
Helix 56	AG2	B	915	935	Right-handed alpha
Helix 57	AG3	B	936	938	Right-handed 310
Helix 58	AG4	B	946	954	Right-handed alpha
Helix 59	AG5	B	955	1003	Right-handed alpha
Helix 60	AG6	B	1110	1115	Right-handed alpha
Helix 61	AG7	C	286	295	Right-handed alpha
Helix 62	AG8	C	329	335	Right-handed alpha
Helix 63	AG9	C	341	345	Right-handed 310
Helix 64	AH1	C	356	363	Right-handed 310
Helix 65	AH2	C	375	381	Right-handed 310
Helix 66	AH3	C	397	402	Right-handed 310
Helix 67	AH4	C	408	414	Right-handed alpha
Helix 68	AH5	C	476	479	Right-handed 310
Helix 69	AH6	C	593	598	Right-handed alpha
Helix 70	AH7	C	604	609	Right-handed alpha
Helix 71	AH8	C	610	612	Right-handed 310
Helix 72	AH9	C	707	714	Right-handed alpha
Helix 73	AI1	C	716	724	Right-handed alpha
Helix 74	AI2	C	725	727	Right-handed 310
Helix 75	AI3	C	728	753	Right-handed alpha
Helix 76	AI4	C	786	796	Right-handed alpha
Helix 77	AI5	C	813	817	Right-handed 310
Helix 78	AI6	C	818	826	Right-handed alpha
Helix 79	AI7	C	836	855	Right-handed alpha
Helix 80	AI8	C	856	861	Right-handed alpha
Helix 81	AI9	C	867	879	Right-handed alpha
Helix 82	AJ1	C	882	889	Right-handed alpha
Helix 83	AJ2	C	889	911	Right-handed alpha
Helix 84	AJ3	C	912	914	Right-handed 310
Helix 85	AJ4	C	915	936	Right-handed alpha
Helix 86	AJ5	C	946	954	Right-handed alpha
Helix 87	AJ6	C	955	1003	Right-handed alpha
Helix 88	AJ7	C	1111	1115	Right-handed 310

There are 51 sheets in PDB entry 8AJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	66	75	anti-parallel
Strand 3	A	255	261	anti-parallel
Strand 4	A	94	100	anti-parallel
Strand 5	A	184	195	anti-parallel
Strand 6	A	198	210	anti-parallel
Strand 7	A	220	227	anti-parallel
Strand 8	A	41	42	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	66	75	anti-parallel
Strand 3	A	80	83	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	60	first strand
Strand 2	A	263	271	anti-parallel
Strand 3	A	277	282	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	235	244	anti-parallel
Strand 3	A	138	148	parallel
Strand 4	A	151	160	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	235	244	anti-parallel
Strand 3	A	105	111	anti-parallel
Strand 4	A	120	126	anti-parallel
Strand 5	A	129	135	anti-parallel
Strand 6	A	166	169	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	306	first strand
Strand 2	A	569	573	anti-parallel
Strand 3	A	583	586	anti-parallel
Strand 4	A	622	625	anti-parallel
Strand 5	A	616	619	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	320	first strand
Strand 2	A	512	517	parallel
Strand 3	A	520	528	anti-parallel
Strand 4	A	558	562	anti-parallel
Strand 5	A	547	551	anti-parallel
Strand 6	A	539	541	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	350	first strand
Strand 2	A	386	395	anti-parallel
Strand 3	A	481	490	anti-parallel
Strand 4	A	423	429	anti-parallel
Strand 5	A	368	372	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	498	499	parallel
Strand 3	A	383	384	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	441	first strand
Strand 2	A	466	471	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	629	first strand
Strand 2	A	661	666	parallel
Strand 3	A	644	649	anti-parallel
Strand 4	A	638	641	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	673	first strand
Strand 2	B	757	759	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	698	first strand
Strand 2	A	1029	1048	anti-parallel
Strand 3	A	1017	1026	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	698	first strand
Strand 2	A	1029	1048	anti-parallel
Strand 3	A	1064	1067	anti-parallel
Strand 4	A	1072	1075	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	706	first strand
Strand 2	A	828	831	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	757	759	first strand
Strand 2	C	671	673	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	767	first strand
Strand 2	A	770	771	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1090	1095	first strand
Strand 2	A	1056	1060	anti-parallel
Strand 3	A	1051	1052	anti-parallel
Strand 4	A	1103	1104	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	B	66	76	anti-parallel
Strand 3	B	255	261	anti-parallel
Strand 4	B	94	100	anti-parallel
Strand 5	B	184	195	anti-parallel
Strand 6	B	198	210	anti-parallel
Strand 7	B	220	227	anti-parallel
Strand 8	B	41	42	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	B	66	76	anti-parallel
Strand 3	B	80	83	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	60	first strand
Strand 2	B	263	271	anti-parallel
Strand 3	B	277	282	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	235	244	anti-parallel
Strand 3	B	105	111	anti-parallel
Strand 4	B	119	126	anti-parallel
Strand 5	B	129	148	anti-parallel
Strand 6	B	151	169	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	235	244	anti-parallel
Strand 3	B	129	148	parallel
Strand 4	B	151	169	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	306	first strand
Strand 2	B	569	573	anti-parallel
Strand 3	B	583	587	anti-parallel
Strand 4	B	622	625	anti-parallel
Strand 5	B	616	619	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	320	first strand
Strand 2	B	512	517	parallel
Strand 3	B	520	528	anti-parallel
Strand 4	B	558	562	anti-parallel
Strand 5	B	547	551	anti-parallel
Strand 6	B	539	541	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	350	first strand
Strand 2	B	386	395	anti-parallel
Strand 3	B	481	490	anti-parallel
Strand 4	B	423	429	anti-parallel
Strand 5	B	368	372	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	354	first strand
Strand 2	B	498	499	parallel
Strand 3	B	383	384	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	441	first strand
Strand 2	B	466	471	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	628	629	first strand
Strand 2	B	661	666	parallel
Strand 3	B	644	649	anti-parallel
Strand 4	B	638	641	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	671	673	first strand
Strand 2	C	757	759	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	698	first strand
Strand 2	B	1029	1048	anti-parallel
Strand 3	B	1017	1026	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	698	first strand
Strand 2	B	1029	1048	anti-parallel
Strand 3	B	1064	1067	anti-parallel
Strand 4	B	1072	1075	anti-parallel
Strand 5	B	1083	1084	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	703	706	first strand
Strand 2	B	828	831	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	766	767	first strand
Strand 2	B	770	771	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1090	1095	first strand
Strand 2	B	1056	1060	anti-parallel
Strand 3	B	1051	1052	anti-parallel
Strand 4	B	1103	1104	parallel

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There are 8 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	35	first strand
Strand 2	C	66	76	anti-parallel
Strand 3	C	255	261	anti-parallel
Strand 4	C	94	100	anti-parallel
Strand 5	C	184	195	anti-parallel
Strand 6	C	198	210	anti-parallel
Strand 7	C	220	227	anti-parallel
Strand 8	C	41	42	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	35	first strand
Strand 2	C	66	76	anti-parallel
Strand 3	C	80	83	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	60	first strand
Strand 2	C	263	271	anti-parallel
Strand 3	C	277	282	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	89	first strand
Strand 2	C	235	244	anti-parallel
Strand 3	C	105	111	anti-parallel
Strand 4	C	120	126	anti-parallel
Strand 5	C	129	148	anti-parallel
Strand 6	C	151	169	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	89	first strand
Strand 2	C	235	244	anti-parallel
Strand 3	C	129	148	parallel
Strand 4	C	151	169	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	306	first strand
Strand 2	C	569	573	anti-parallel
Strand 3	C	583	587	anti-parallel
Strand 4	C	622	625	anti-parallel
Strand 5	C	616	619	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	320	first strand
Strand 2	C	512	517	parallel
Strand 3	C	520	528	anti-parallel
Strand 4	C	558	562	anti-parallel
Strand 5	C	547	551	anti-parallel
Strand 6	C	539	541	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	350	first strand
Strand 2	C	386	395	anti-parallel
Strand 3	C	481	490	anti-parallel
Strand 4	C	423	429	anti-parallel
Strand 5	C	368	372	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	354	first strand
Strand 2	C	498	499	parallel
Strand 3	C	383	384	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	436	441	first strand
Strand 2	C	466	471	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	628	629	first strand
Strand 2	C	661	666	parallel
Strand 3	C	644	649	anti-parallel
Strand 4	C	638	641	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	698	first strand
Strand 2	C	1029	1048	anti-parallel
Strand 3	C	1017	1026	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	698	first strand
Strand 2	C	1029	1048	anti-parallel
Strand 3	C	1064	1067	anti-parallel
Strand 4	C	1072	1075	anti-parallel
Strand 5	C	1083	1084	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	703	706	first strand
Strand 2	C	828	831	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	766	767	first strand
Strand 2	C	770	771	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1090	1095	first strand
Strand 2	C	1056	1060	anti-parallel
Strand 3	C	1051	1052	anti-parallel
Strand 4	C	1103	1104	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AJA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AJA