Analysis of interatomic Contacts of Structural Units in PDB entry:
8AJK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AJK entry

There are 2 chains in PDB entry 8AJK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	HIS 445
B	GLY 0	HIS 446

There are 38 helices in PDB entry 8AJK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	25	Right-handed alpha
Helix 2	AA2	A	35	39	Right-handed 310
Helix 3	AA3	A	40	46	Right-handed alpha
Helix 4	AA4	A	47	60	Right-handed alpha
Helix 5	AA5	A	63	88	Right-handed alpha
Helix 6	AA6	A	140	144	Right-handed 310
Helix 7	AA7	A	149	155	Right-handed alpha
Helix 8	AA8	A	169	182	Right-handed alpha
Helix 9	AA9	A	200	214	Right-handed alpha
Helix 10	AB1	A	261	265	Right-handed 310
Helix 11	AB2	A	292	296	Right-handed 310
Helix 12	AB3	A	300	317	Right-handed alpha
Helix 13	AB4	A	345	352	Right-handed alpha
Helix 14	AB5	A	364	366	Right-handed 310
Helix 15	AB6	A	367	373	Right-handed alpha
Helix 16	AB7	A	399	414	Right-handed alpha
Helix 17	AB8	A	416	423	Right-handed alpha
Helix 18	AB9	A	430	432	Right-handed 310
Helix 19	AC1	A	433	438	Right-handed alpha
Helix 20	AC2	B	12	25	Right-handed alpha
Helix 21	AC3	B	35	39	Right-handed 310
Helix 22	AC4	B	40	46	Right-handed alpha
Helix 23	AC5	B	47	60	Right-handed alpha
Helix 24	AC6	B	63	88	Right-handed alpha
Helix 25	AC7	B	140	144	Right-handed 310
Helix 26	AC8	B	149	154	Right-handed alpha
Helix 27	AC9	B	169	182	Right-handed alpha
Helix 28	AD1	B	200	214	Right-handed alpha
Helix 29	AD2	B	261	265	Right-handed 310
Helix 30	AD3	B	292	296	Right-handed 310
Helix 31	AD4	B	300	316	Right-handed alpha
Helix 32	AD5	B	345	352	Right-handed alpha
Helix 33	AD6	B	364	366	Right-handed 310
Helix 34	AD7	B	367	373	Right-handed alpha
Helix 35	AD8	B	399	413	Right-handed alpha
Helix 36	AD9	B	416	423	Right-handed alpha
Helix 37	AE1	B	430	432	Right-handed 310
Helix 38	AE2	B	433	438	Right-handed alpha

There are 12 sheets in PDB entry 8AJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	116	121	parallel
Strand 3	A	106	110	anti-parallel
Strand 4	A	98	101	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	96	first strand
Strand 2	A	29	33	parallel
Strand 3	A	6	9	parallel
Strand 4	A	124	127	parallel
Strand 5	A	288	290	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	254	256	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	247	250	parallel
Strand 3	A	162	166	parallel
Strand 4	A	185	189	parallel
Strand 5	A	217	219	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	229	first strand
Strand 2	A	234	238	anti-parallel
Strand 3	A	243	245	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	333	first strand
Strand 2	A	339	343	anti-parallel
Strand 3	A	390	396	anti-parallel
Strand 4	A	378	384	anti-parallel
Strand 5	A	356	362	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	116	121	parallel
Strand 3	B	106	110	anti-parallel
Strand 4	B	98	101	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	96	first strand
Strand 2	B	29	33	parallel
Strand 3	B	6	9	parallel
Strand 4	B	124	127	parallel
Strand 5	B	288	290	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	133	first strand
Strand 2	B	254	256	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	247	250	parallel
Strand 3	B	162	166	parallel
Strand 4	B	185	189	parallel
Strand 5	B	217	219	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	229	first strand
Strand 2	B	234	238	anti-parallel
Strand 3	B	242	245	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	339	343	anti-parallel
Strand 3	B	390	396	anti-parallel
Strand 4	B	378	384	anti-parallel
Strand 5	B	356	362	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AJK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AJK