Analysis of interatomic Contacts of Structural Units in PDB entry:
8AJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AJP entry

There is 1 chain in PDB entry 8AJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 11ALA 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8AJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 31Right-handed alpha
Helix 2
AA2
A
42 52Right-handed alpha
Helix 3
AA3
A
65 75Right-handed alpha
Helix 4
AA4
A
84 100Right-handed alpha
Helix 5
AA5
A
125 129Right-handed 310
Helix 6
AA6
A
130 132Right-handed 310
Helix 7
AA7
A
133 145Right-handed alpha
Helix 8
AA8
A
169 178Right-handed alpha
Helix 9
AA9
A
193 197Right-handed 310
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There is 1 sheet (AA1) in PDB entry 8AJP.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 105first strand
Strand 2
A
78 82parallel
Strand 3
A
57 60parallel
Strand 4
A
119 123parallel
Strand 5
A
150 156parallel
Strand 6
A
200 207anti-parallel
Strand 7
A
181 187anti-parallel
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