Analysis of interatomic Contacts of Structural Units in PDB entry:
8AK3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AK3 entry

There is 1 chain in PDB entry 8AK3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1ASN 3477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8AK3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3220 3222Right-handed 310
Helix 2
AA2
A
3223 3237Right-handed alpha
Helix 3
AA3
A
3266 3271Right-handed alpha
Helix 4
AA4
A
3272 3275Right-handed 310
Helix 5
AA5
A
3280 3300Right-handed alpha
Helix 6
AA6
A
3308 3310Right-handed 310
Helix 7
AA7
A
3345 3349Right-handed 310
Helix 8
AA8
A
3350 3355Right-handed alpha
Helix 9
AA9
A
3361 3378Right-handed alpha
Helix 10
AB1
A
3386 3397Right-handed alpha
Helix 11
AB2
A
3403 3409Right-handed 310
Helix 12
AB3
A
3410 3419Right-handed alpha
Helix 13
AB4
A
3424 3428Right-handed 310
Helix 14
AB5
A
3430 3436Right-handed alpha
Helix 15
AB6
A
3437 3445Right-handed 310
Helix 16
AB7
A
3456 3469Right-handed alpha
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There are 4 sheets in PDB entry 8AK3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3186 3194first strand
Strand 2
A
3198 3205anti-parallel
Strand 3
A
3211 3217anti-parallel
Strand 4
A
3255 3259anti-parallel
Strand 5
A
3245 3250anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3277 3279first strand
Strand 2
A
3453 3455anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3302 3303first strand
Strand 2
A
3331 3332anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3312 3314first strand
Strand 2
A
3322 3324anti-parallel
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