Analysis of interatomic Contacts of Structural Units in PDB entry:
8AK4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AK4 entry

There is 1 chain in PDB entry 8AK4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 81GLN 593
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8AK4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
97 112Right-handed alpha
Helix 2
AA2
A
158 163Right-handed alpha
Helix 3
AA3
A
188 201Right-handed alpha
Helix 4
AA4
A
209 219Right-handed alpha
Helix 5
AA5
A
222 228Right-handed alpha
Helix 6
AA6
A
248 259Right-handed alpha
Helix 7
AA7
A
272 285Right-handed alpha
Helix 8
AA8
A
303 311Right-handed alpha
Helix 9
AA9
A
370 378Right-handed alpha
Helix 10
AB1
A
391 393Right-handed 310
Helix 11
AB2
A
402 405Right-handed 310
Helix 12
AB3
A
441 454Right-handed alpha
Helix 13
AB4
A
464 474Right-handed alpha
Helix 14
AB5
A
480 485Right-handed alpha
Helix 15
AB6
A
487 493Right-handed alpha
Helix 16
AB7
A
494 498Right-handed 310
Helix 17
AB8
A
499 514Right-handed alpha
Helix 18
AB9
A
517 525Right-handed alpha
Helix 19
AC1
A
530 542Right-handed alpha
Helix 20
AC2
A
543 549Right-handed alpha
Helix 21
AC3
A
551 557Right-handed alpha
Helix 22
AC4
A
564 574Right-handed alpha
Helix 23
AC5
A
575 589Right-handed alpha
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There are 4 sheets in PDB entry 8AK4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
154 156anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
320 323parallel
Strand 3
A
294 301anti-parallel
Strand 4
A
122 129anti-parallel
Strand 5
A
268 271anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 148first strand
Strand 2
A
132 139anti-parallel
Strand 3
A
178 186anti-parallel
Strand 4
A
232 241anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 341first strand
Strand 2
A
347 358anti-parallel
Strand 3
A
361 367anti-parallel
Strand 4
A
394 400parallel
Strand 5
A
384 390anti-parallel
Strand 6
A
330 341anti-parallel
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