Analysis of interatomic Contacts of Structural Units in PDB entry:
8AKO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AKO entry

There are 2 chains in PDB entry 8AKO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 9PRO 297
B
 GLY 484CYS 729
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8AKO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
39 80Right-handed alpha
Helix 3
AA3
A
132 141Right-handed alpha
Helix 4
AA4
A
146 166Right-handed alpha
Helix 5
AA5
A
167 171Right-handed 310
Helix 6
AA6
A
178 223Right-handed alpha
Helix 7
AA7
A
225 239Right-handed alpha
Helix 8
AA8
A
242 268Right-handed alpha
Helix 9
AA9
B
486 497Right-handed alpha
Helix 10
AB1
B
546 548Right-handed 310
Helix 11
AB2
B
552 559Right-handed alpha
Helix 12
AB3
B
562 574Right-handed alpha
Helix 13
AB4
B
584 589Right-handed alpha
Helix 14
AB5
B
616 621Right-handed alpha
Helix 15
AB6
B
621 630Right-handed alpha
Helix 16
AB7
B
635 639Right-handed 310
Helix 17
AB8
B
653 663Right-handed alpha
Helix 18
AB9
B
664 667Right-handed 310
Helix 19
AC1
B
671 698Right-handed alpha
Helix 20
AC2
B
700 728Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8AKO.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
543 544first strand
Strand 2
B
521 525parallel
Strand 3
B
511 516anti-parallel
Strand 4
B
578 583anti-parallel
Strand 5
B
598 599parallel
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