Analysis of interatomic Contacts of Structural Units in PDB entry:
8ALK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ALK entry

There are 2 chains in PDB entry 8ALK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 20PHE 483
B
 MET 2MET 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 8ALK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 39Right-handed alpha
Helix 2
AA2
A
42 50Right-handed alpha
Helix 3
AA3
A
114 134Right-handed alpha
Helix 4
AA4
A
137 147Right-handed alpha
Helix 5
AA5
A
253 258Right-handed alpha
Helix 6
AA6
A
277 283Right-handed alpha
Helix 7
AA7
A
284 289Right-handed 310
Helix 8
AA8
A
295 328Right-handed alpha
Helix 9
AA9
A
329 333Right-handed 310
Helix 10
AB1
A
337 348Right-handed alpha
Helix 11
AB2
A
350 363Right-handed alpha
Helix 12
AB3
A
379 390Right-handed alpha
Helix 13
AB4
A
405 417Right-handed alpha
Helix 14
AB5
A
420 425Right-handed alpha
Helix 15
AB6
A
426 431Right-handed 310
Helix 16
AB7
A
434 448Right-handed alpha
Helix 17
AB8
A
459 461Right-handed 310
Helix 18
AB9
A
468 483Right-handed alpha
Helix 19
AC1
B
20 30Right-handed alpha
Helix 20
AC2
B
66 69Right-handed 310
Helix 21
AC3
B
92 98Right-handed alpha
Helix 22
AC4
B
98 110Right-handed alpha
Helix 23
AC5
B
132 143Right-handed alpha
Helix 24
AC6
B
157 173Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8ALK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
82 90anti-parallel
Strand 3
A
96 106anti-parallel
Strand 4
A
166 176anti-parallel
Strand 5
A
180 188anti-parallel
Strand 6
A
237 243anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
75 79anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 206first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
248 252anti-parallel
Strand 4
A
395 402anti-parallel
Strand 5
A
60 66anti-parallel
Strand 6
A
51 57anti-parallel
Strand 7
A
455 457anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 267first strand
Strand 2
A
271 276anti-parallel
Strand 3
A
208 212anti-parallel
Strand 4
A
217 219anti-parallel
Strand 5
B
71 74parallel
Strand 6
A
371 372anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 450first strand
Strand 2
A
464 465anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 52first strand
Strand 2
B
55 63anti-parallel
Strand 3
B
7 14parallel
Strand 4
B
83 89parallel
Strand 5
B
115 121parallel
Strand 6
B
147 149parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il