Analysis of interatomic Contacts of Structural Units in PDB entry:
8ALO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ALO entry

There are 2 chains in PDB entry 8ALO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 206CYS 293
B
 ASP 26SER 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 8ALO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
226 228Right-handed 310
Helix 2
AA2
A
229 242Right-handed alpha
Helix 3
AA3
A
243 244Right-handed 310
Helix 4
AA4
A
245 249Right-handed 310
Helix 5
AA5
A
273 277Right-handed 310
Helix 6
AA6
A
285 293Right-handed alpha
Helix 7
AA7
B
27 35Right-handed alpha
Helix 8
AA8
B
48 52Right-handed 310
Helix 9
AA9
B
128 144Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 8ALO.

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 212first strand
Strand 2
A
215 219anti-parallel
Strand 3
A
252 258parallel
Strand 4
A
262 268anti-parallel
Strand 5
A
278 283anti-parallel
Strand 6
B
38 46parallel
Strand 7
B
166 170anti-parallel
Strand 8
B
156 161anti-parallel
Strand 9
B
147 153anti-parallel
Strand 10
B
108 122anti-parallel
Strand 11
B
92 105anti-parallel
Strand 12
B
74 84anti-parallel
Strand 13
B
60 69anti-parallel
Strand 14
B
38 46anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il