Analysis of interatomic Contacts of Structural Units in PDB entry:
8ALZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ALZ entry

There are 2 chains in PDB entry 8ALZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 168	ALA 580
B	HIS 401	SER 2183

There are 87 helices in PDB entry 8ALZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	209	219	Right-handed alpha
Helix 2	AA2	A	395	405	Right-handed alpha
Helix 3	AA3	A	424	429	Right-handed alpha
Helix 4	AA4	A	440	449	Right-handed alpha
Helix 5	AA5	A	477	488	Right-handed alpha
Helix 6	AA6	A	519	526	Right-handed alpha
Helix 7	AA7	A	529	533	Right-handed 310
Helix 8	AA8	A	563	580	Right-handed alpha
Helix 9	AA9	B	464	471	Right-handed alpha
Helix 10	AB1	B	478	489	Right-handed alpha
Helix 11	AB2	B	502	521	Right-handed alpha
Helix 12	AB3	B	539	554	Right-handed alpha
Helix 13	AB4	B	571	578	Right-handed alpha
Helix 14	AB5	B	584	594	Right-handed alpha
Helix 15	AB6	B	614	619	Right-handed alpha
Helix 16	AB7	B	620	639	Right-handed alpha
Helix 17	AB8	B	654	661	Right-handed alpha
Helix 18	AB9	B	692	715	Right-handed alpha
Helix 19	AC1	B	724	741	Right-handed alpha
Helix 20	AC2	B	742	748	Right-handed 310
Helix 21	AC3	B	753	766	Right-handed alpha
Helix 22	AC4	B	769	775	Right-handed alpha
Helix 23	AC5	B	787	801	Right-handed alpha
Helix 24	AC6	B	811	816	Right-handed alpha
Helix 25	AC7	B	842	852	Right-handed alpha
Helix 26	AC8	B	869	878	Right-handed alpha
Helix 27	AC9	B	893	905	Right-handed alpha
Helix 28	AD1	B	909	920	Right-handed alpha
Helix 29	AD2	B	920	929	Right-handed alpha
Helix 30	AD3	B	930	934	Right-handed 310
Helix 31	AD4	B	936	943	Right-handed alpha
Helix 32	AD5	B	946	963	Right-handed alpha
Helix 33	AD6	B	979	988	Right-handed alpha
Helix 34	AD7	B	991	1002	Right-handed alpha
Helix 35	AD8	B	1009	1017	Right-handed alpha
Helix 36	AD9	B	1018	1022	Right-handed 310
Helix 37	AE1	B	1027	1041	Right-handed alpha
Helix 38	AE2	B	1052	1066	Right-handed alpha
Helix 39	AE3	B	1072	1101	Right-handed alpha
Helix 40	AE4	B	1102	1119	Right-handed alpha
Helix 41	AE5	B	1125	1130	Right-handed 310
Helix 42	AE6	B	1134	1144	Right-handed alpha
Helix 43	AE7	B	1147	1154	Right-handed alpha
Helix 44	AE8	B	1155	1164	Right-handed alpha
Helix 45	AE9	B	1165	1177	Right-handed alpha
Helix 46	AF1	B	1209	1214	Right-handed alpha
Helix 47	AF2	B	1241	1248	Right-handed alpha
Helix 48	AF3	B	1309	1314	Right-handed 310
Helix 49	AF4	B	1315	1320	Right-handed alpha
Helix 50	AF5	B	1328	1338	Right-handed alpha
Helix 51	AF6	B	1354	1370	Right-handed alpha
Helix 52	AF7	B	1381	1396	Right-handed alpha
Helix 53	AF8	B	1410	1420	Right-handed alpha
Helix 54	AF9	B	1427	1435	Right-handed alpha
Helix 55	AG1	B	1443	1447	Right-handed 310
Helix 56	AG2	B	1455	1459	Right-handed 310
Helix 57	AG3	B	1464	1481	Right-handed alpha
Helix 58	AG4	B	1495	1503	Right-handed alpha
Helix 59	AG5	B	1534	1553	Right-handed alpha
Helix 60	AG6	B	1566	1579	Right-handed alpha
Helix 61	AG7	B	1592	1603	Right-handed alpha
Helix 62	AG8	B	1622	1625	Right-handed 310
Helix 63	AG9	B	1626	1637	Right-handed alpha
Helix 64	AH1	B	1679	1688	Right-handed alpha
Helix 65	AH2	B	1706	1719	Right-handed alpha
Helix 66	AH3	B	1727	1729	Right-handed 310
Helix 67	AH4	B	1730	1741	Right-handed alpha
Helix 68	AH5	B	1746	1754	Right-handed alpha
Helix 69	AH6	B	1757	1766	Right-handed alpha
Helix 70	AH7	B	1767	1771	Right-handed 310
Helix 71	AH8	B	1776	1798	Right-handed alpha
Helix 72	AH9	B	1813	1822	Right-handed alpha
Helix 73	AI1	B	1825	1835	Right-handed alpha
Helix 74	AI2	B	1841	1851	Right-handed alpha
Helix 75	AI3	B	1852	1856	Right-handed 310
Helix 76	AI4	B	1863	1872	Right-handed alpha
Helix 77	AI5	B	1880	1884	Right-handed 310
Helix 78	AI6	B	1886	1900	Right-handed alpha
Helix 79	AI7	B	1906	1935	Right-handed alpha
Helix 80	AI8	B	1937	1953	Right-handed alpha
Helix 81	AI9	B	1959	1964	Right-handed 310
Helix 82	AJ1	B	1968	1970	Right-handed 310
Helix 83	AJ2	B	1971	1977	Right-handed alpha
Helix 84	AJ3	B	1995	2004	Right-handed alpha
Helix 85	AJ4	B	2010	2015	Right-handed alpha
Helix 86	AJ5	B	2016	2019	Right-handed 310
Helix 87	AJ6	B	2022	2033	Right-handed alpha

There are 14 sheets in PDB entry 8ALZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	457	first strand
Strand 2	A	537	541	anti-parallel
Strand 3	A	509	518	anti-parallel
Strand 4	A	466	471	anti-parallel
Strand 5	A	435	439	parallel
Strand 6	A	560	561	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	580	583	first strand
Strand 2	B	533	536	parallel
Strand 3	B	607	609	parallel
Strand 4	B	643	648	parallel
Strand 5	B	495	498	parallel
Strand 6	B	669	671	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	779	781	first strand
Strand 2	B	805	807	parallel
Strand 3	B	718	720	parallel
Strand 4	B	822	824	parallel
Strand 5	B	863	865	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	829	830	first strand
Strand 2	B	839	840	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	967	970	first strand
Strand 2	B	975	978	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1182	1187	first strand
Strand 2	B	1198	1204	anti-parallel
Strand 3	B	1251	1255	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1233	1240	first strand
Strand 2	B	1218	1225	anti-parallel
Strand 3	B	1266	1273	anti-parallel
Strand 4	B	1280	1286	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1405	1406	first strand
Strand 2	B	1424	1426	parallel
Strand 3	B	1376	1378	parallel
Strand 4	B	1449	1453	parallel
Strand 5	B	1485	1489	parallel
Strand 6	B	1345	1348	parallel
Strand 7	B	1510	1512	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1522	1525	first strand
Strand 2	B	1699	1703	parallel
Strand 3	B	1659	1662	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1559	1561	first strand
Strand 2	B	1643	1645	parallel
Strand 3	B	1618	1619	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1666	1668	first strand
Strand 2	B	1675	1677	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1801	1802	first strand
Strand 2	B	1811	1812	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2056	2058	first strand
Strand 2	B	2036	2044	anti-parallel
Strand 3	B	2080	2088	anti-parallel
Strand 4	B	2139	2146	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2126	2133	first strand
Strand 2	B	2115	2121	anti-parallel
Strand 3	B	2154	2163	anti-parallel
Strand 4	B	2171	2178	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ALZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ALZ