Analysis of interatomic Contacts of Structural Units in PDB entry:
8AM4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AM4 entry

There are 2 chains in PDB entry 8AM4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 10LEU 78
A
 VAL 80GLY 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 8AM4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 21Right-handed alpha
Helix 2
AA2
A
70 75Right-handed 310
Helix 3
AA3
A
80 84Right-handed 310
Helix 4
AA4
A
87 93Right-handed 310
Helix 5
AA5
A
94 99Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8AM4.

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 35first strand
Strand 2
A
41 50anti-parallel
Strand 3
A
55 62anti-parallel
Strand 4
A
229 239anti-parallel
Strand 5
A
211 220anti-parallel
Strand 6
A
161 167anti-parallel
Strand 7
A
172 182anti-parallel
Strand 8
A
188 199anti-parallel
Strand 9
A
104 112anti-parallel
Strand 10
A
117 127anti-parallel
Strand 11
A
130 140anti-parallel
Strand 12
A
25 35parallel
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