Analysis of interatomic Contacts of Structural Units in PDB entry:
8AM5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AM5 entry

There are 17 chains in PDB entry 8AM5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 13	ALA 344
D	TRP 32	ALA 330
E	TRP 20	PHE 56
F	VAL 17	ARG 44
I	LEU 2	ARG 30
S	HIS 31	ASN 333
a	LYS 11	GLY 751
b	THR 3	GLY 731
c	SER 2	TYR 81
d	GLU 3	VAL 141
e	ALA 2	GLN 70
f	ASP 24	ARG 165
i	MET 1	GLY 40
j	MET 1	PRO 40
k	ALA 9	MET 83
l	ASN 5	VAL 147
m	MET 1	LYS 31

There are137 helices in PDB entry 8AM5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	23	Right-handed alpha
Helix 2	AA2	A	30	55	Right-handed alpha
Helix 3	AA3	A	95	99	Right-handed 310
Helix 4	AA4	A	101	108	Right-handed alpha
Helix 5	AA5	A	109	137	Right-handed alpha
Helix 6	AA6	A	142	159	Right-handed alpha
Helix 7	AA7	A	159	166	Right-handed alpha
Helix 8	AA8	A	167	171	Right-handed 310
Helix 9	AA9	A	176	191	Right-handed alpha
Helix 10	AB1	A	195	223	Right-handed alpha
Helix 11	AB2	A	268	295	Right-handed alpha
Helix 12	AB3	A	316	330	Right-handed alpha
Helix 13	AB4	D	36	54	Right-handed alpha
Helix 14	AB5	D	66	70	Right-handed 310
Helix 15	AB6	D	82	86	Right-handed 310
Helix 16	AB7	D	96	99	Right-handed 310
Helix 17	AB8	D	100	107	Right-handed alpha
Helix 18	AB9	D	109	137	Right-handed alpha
Helix 19	AC1	D	140	157	Right-handed alpha
Helix 20	AC2	D	158	164	Right-handed alpha
Helix 21	AC3	D	166	170	Right-handed 310
Helix 22	AC4	D	175	190	Right-handed alpha
Helix 23	AC5	D	194	221	Right-handed alpha
Helix 24	AC6	D	245	257	Right-handed alpha
Helix 25	AC7	D	263	291	Right-handed alpha
Helix 26	AC8	D	298	308	Right-handed alpha
Helix 27	AC9	D	313	328	Right-handed alpha
Helix 28	AD1	E	25	40	Right-handed alpha
Helix 29	AD2	E	42	48	Right-handed alpha
Helix 30	AD3	F	18	43	Right-handed alpha
Helix 31	AD4	I	3	26	Right-handed alpha
Helix 32	AD5	a	25	30	Right-handed 310
Helix 33	AD6	a	35	40	Right-handed alpha
Helix 34	AD7	a	45	52	Right-handed alpha
Helix 35	AD8	a	57	62	Right-handed alpha
Helix 36	AD9	a	64	97	Right-handed alpha
Helix 37	AE1	a	99	106	Right-handed alpha
Helix 38	AE2	a	122	127	Right-handed 310
Helix 39	AE3	a	142	150	Right-handed alpha
Helix 40	AE4	a	154	182	Right-handed alpha
Helix 41	AE5	a	186	191	Right-handed alpha
Helix 42	AE6	a	192	203	Right-handed alpha
Helix 43	AE7	a	204	219	Right-handed alpha
Helix 44	AE8	a	219	229	Right-handed alpha
Helix 45	AE9	a	238	245	Right-handed alpha
Helix 46	AF1	a	245	253	Right-handed alpha
Helix 47	AF2	a	254	259	Right-handed 310
Helix 48	AF3	a	260	265	Right-handed alpha
Helix 49	AF4	a	267	274	Right-handed 310
Helix 50	AF5	a	289	308	Right-handed alpha
Helix 51	AF6	a	320	328	Right-handed alpha
Helix 52	AF7	a	339	345	Right-handed alpha
Helix 53	AF8	a	347	373	Right-handed alpha
Helix 54	AF9	a	382	415	Right-handed alpha
Helix 55	AG1	a	417	421	Right-handed 310
Helix 56	AG2	a	424	432	Right-handed alpha
Helix 57	AG3	a	432	464	Right-handed alpha
Helix 58	AG4	a	466	470	Right-handed 310
Helix 59	AG5	a	480	492	Right-handed alpha
Helix 60	AG6	a	528	555	Right-handed alpha
Helix 61	AG7	a	564	569	Right-handed alpha
Helix 62	AG8	a	577	581	Right-handed 310
Helix 63	AG9	a	586	617	Right-handed alpha
Helix 64	AH1	a	634	639	Right-handed alpha
Helix 65	AH2	a	641	649	Right-handed alpha
Helix 66	AH3	a	649	654	Right-handed alpha
Helix 67	AH4	a	654	659	Right-handed alpha
Helix 68	AH5	a	665	687	Right-handed alpha
Helix 69	AH6	a	689	707	Right-handed alpha
Helix 70	AH7	a	719	748	Right-handed alpha
Helix 71	AH8	b	9	14	Right-handed alpha
Helix 72	AH9	b	18	27	Right-handed alpha
Helix 73	AI1	b	30	34	Right-handed 310
Helix 74	AI2	b	38	72	Right-handed alpha
Helix 75	AI3	b	73	78	Right-handed alpha
Helix 76	AI4	b	97	105	Right-handed alpha
Helix 77	AI5	b	119	128	Right-handed alpha
Helix 78	AI6	b	131	156	Right-handed alpha
Helix 79	AI7	b	164	169	Right-handed alpha
Helix 80	AI8	b	170	181	Right-handed alpha
Helix 81	AI9	b	183	197	Right-handed alpha
Helix 82	AJ1	b	197	203	Right-handed alpha
Helix 83	AJ2	b	222	228	Right-handed alpha
Helix 84	AJ3	b	229	235	Right-handed 310
Helix 85	AJ4	b	269	288	Right-handed alpha
Helix 86	AJ5	b	300	308	Right-handed alpha
Helix 87	AJ6	b	319	327	Right-handed alpha
Helix 88	AJ7	b	327	353	Right-handed alpha
Helix 89	AJ8	b	362	395	Right-handed alpha
Helix 90	AJ9	b	404	410	Right-handed alpha
Helix 91	AK1	b	412	444	Right-handed alpha
Helix 92	AK2	b	446	450	Right-handed 310
Helix 93	AK3	b	455	466	Right-handed alpha
Helix 94	AK4	b	474	478	Right-handed 310
Helix 95	AK5	b	481	485	Right-handed 310
Helix 96	AK6	b	490	500	Right-handed alpha
Helix 97	AK7	b	510	538	Right-handed alpha
Helix 98	AK8	b	546	551	Right-handed 310
Helix 99	AK9	b	568	601	Right-handed alpha
Helix 100	AL1	b	602	610	Right-handed alpha
Helix 101	AL2	b	612	620	Right-handed alpha
Helix 102	AL3	b	620	625	Right-handed alpha
Helix 103	AL4	b	625	630	Right-handed alpha
Helix 104	AL5	b	640	663	Right-handed alpha
Helix 105	AL6	b	664	681	Right-handed alpha
Helix 106	AL7	b	698	730	Right-handed alpha
Helix 107	AL8	c	15	21	Right-handed alpha
Helix 108	AL9	c	44	48	Right-handed 310
Helix 109	AM1	c	52	58	Right-handed alpha
Helix 110	AM2	c	73	78	Right-handed alpha
Helix 111	AM3	d	19	25	Right-handed alpha
Helix 112	AM4	d	61	75	Right-handed alpha
Helix 113	AM5	d	121	125	Right-handed 310
Helix 114	AM6	d	127	131	Right-handed 310
Helix 115	AM7	e	62	64	Right-handed 310
Helix 116	AM8	f	35	43	Right-handed alpha
Helix 117	AM9	f	53	62	Right-handed alpha
Helix 118	AN1	f	83	113	Right-handed alpha
Helix 119	AN2	f	119	124	Right-handed alpha
Helix 120	AN3	f	126	135	Right-handed alpha
Helix 121	AN4	f	136	138	Right-handed 310
Helix 122	AN5	f	139	151	Right-handed alpha
Helix 123	AN6	f	156	160	Right-handed 310
Helix 124	AN7	i	9	20	Right-handed alpha
Helix 125	AN8	i	20	35	Right-handed alpha
Helix 126	AN9	j	2	9	Right-handed alpha
Helix 127	AO1	j	10	33	Right-handed alpha
Helix 128	AO2	k	17	37	Right-handed alpha
Helix 129	AO3	k	50	55	Right-handed 310
Helix 130	AO4	k	58	83	Right-handed alpha
Helix 131	AO5	l	12	14	Right-handed 310
Helix 132	AO6	l	27	36	Right-handed alpha
Helix 133	AO7	l	45	60	Right-handed alpha
Helix 134	AO8	l	62	69	Right-handed alpha
Helix 135	AO9	l	76	104	Right-handed alpha
Helix 136	AP1	l	116	143	Right-handed alpha
Helix 137	AP2	m	4	31	Right-handed alpha

There are 21 sheets in PDB entry 8AM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	174	175	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	343	first strand
Strand 2	S	168	172	anti-parallel
Strand 3	S	158	161	anti-parallel
Strand 4	S	148	153	anti-parallel
Strand 5	S	138	145	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	173	174	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	40	44	first strand
Strand 2	S	328	332	anti-parallel
Strand 3	S	320	323	anti-parallel
Strand 4	S	311	314	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	51	56	first strand
Strand 2	S	63	67	anti-parallel
Strand 3	S	72	75	anti-parallel
Strand 4	S	83	85	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	95	102	first strand
Strand 2	S	105	111	anti-parallel
Strand 3	S	114	118	anti-parallel
Strand 4	S	126	127	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	182	184	first strand
Strand 2	S	190	193	anti-parallel
Strand 3	S	199	203	anti-parallel
Strand 4	S	211	214	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	221	226	first strand
Strand 2	S	232	236	anti-parallel
Strand 3	S	241	243	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	268	271	first strand
Strand 2	S	277	280	anti-parallel
Strand 3	S	286	289	anti-parallel
Strand 4	S	297	298	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	16	18	first strand
Strand 2	a	183	185	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	113	115	first strand
Strand 2	a	137	138	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	514	516	first strand
Strand 2	a	519	522	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	619	621	first strand
Strand 2	a	627	629	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	632	633	first strand
Strand 2	b	636	637	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	4	7	first strand
Strand 2	c	65	68	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	27	30	first strand
Strand 2	c	38	41	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	53	59	first strand
Strand 2	d	27	34	anti-parallel
Strand 3	d	84	88	anti-parallel
Strand 4	d	94	98	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	38	41	first strand
Strand 2	d	47	50	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	58	61	first strand
Strand 2	e	37	40	anti-parallel
Strand 3	e	22	27	anti-parallel
Strand 4	e	9	11	anti-parallel
Strand 5	e	66	68	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	30	31	first strand
Strand 2	f	66	67	anti-parallel
Strand 3	f	73	74	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	9	10	first strand
Strand 2	l	20	21	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AM5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AM5