Analysis of interatomic Contacts of Structural Units in PDB entry:
8AMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AMC entry

There are 4 chains in PDB entry 8AMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4GLY 161
B
 GLU 4GLY 161
C
 ASN 5GLY 161
D
 ASN 5GLY 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8AMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed alpha
Helix 2
AA2
A
29 34Right-handed 310
Helix 3
AA3
A
128 141Right-handed alpha
Helix 4
AA4
A
151 153Right-handed 310
Helix 5
AA5
A
156 160Right-handed 310
Helix 6
AA6
B
12 17Right-handed alpha
Helix 7
AA7
B
29 33Right-handed 310
Helix 8
AA8
B
128 141Right-handed alpha
Helix 9
AA9
B
151 153Right-handed 310
Helix 10
AB1
B
156 160Right-handed 310
Helix 11
AB2
C
12 17Right-handed alpha
Helix 12
AB3
C
29 33Right-handed 310
Helix 13
AB4
C
128 141Right-handed alpha
Helix 14
AB5
C
151 153Right-handed 310
Helix 15
AB6
C
156 160Right-handed 310
Helix 16
AB7
D
12 17Right-handed alpha
Helix 17
AB8
D
29 33Right-handed 310
Helix 18
AB9
D
128 141Right-handed alpha
Helix 19
AC1
D
151 153Right-handed 310
Helix 20
AC2
D
156 160Right-handed 310
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There are 4 sheets in PDB entry 8AMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
42 50anti-parallel
Strand 3
A
53 62anti-parallel
Strand 4
A
65 75anti-parallel
Strand 5
B
65 77parallel
Strand 6
B
54 62anti-parallel
Strand 7
B
42 48anti-parallel
Strand 8
B
18 19anti-parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 149first strand
Strand 2
A
21 27anti-parallel
Strand 3
A
115 122anti-parallel
Strand 4
A
101 108anti-parallel
Strand 5
A
88 97anti-parallel
Strand 6
A
80 84anti-parallel
Strand 7
A
65 75anti-parallel
Strand 8
B
65 77parallel
Strand 9
B
80 84anti-parallel
Strand 10
B
88 97anti-parallel
Strand 11
B
101 109anti-parallel
Strand 12
B
115 122anti-parallel
Strand 13
B
21 27anti-parallel
Strand 14
B
146 149anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 19first strand
Strand 2
C
42 48anti-parallel
Strand 3
C
53 62anti-parallel
Strand 4
C
65 77anti-parallel
Strand 5
C
80 84anti-parallel
Strand 6
C
88 97anti-parallel
Strand 7
C
101 109anti-parallel
Strand 8
C
115 122anti-parallel
Strand 9
C
21 27anti-parallel
Strand 10
C
146 149anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 19first strand
Strand 2
D
42 48anti-parallel
Strand 3
D
53 62anti-parallel
Strand 4
D
65 75anti-parallel
Strand 5
D
80 84anti-parallel
Strand 6
D
88 97anti-parallel
Strand 7
D
101 109anti-parallel
Strand 8
D
115 122anti-parallel
Strand 9
D
21 27anti-parallel
Strand 10
D
146 149anti-parallel
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