Analysis of interatomic Contacts of Structural Units in PDB entry:
8AMF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AMF entry

There are 6 chains in PDB entry 8AMF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 9	ARG 341
C	A 2004	A 2013
D	T 1003	T 1012
B	GLU 9	ARG 341
F	GLU 9	ARG 341
G	GLU 9	ARG 341

There are 51 helices in PDB entry 8AMF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	34	Right-handed alpha
Helix 2	AA2	A	43	49	Right-handed 310
Helix 3	AA3	A	85	98	Right-handed alpha
Helix 4	AA4	A	113	120	Right-handed alpha
Helix 5	AA5	A	134	148	Right-handed alpha
Helix 6	AA6	A	164	169	Right-handed alpha
Helix 7	AA7	A	179	196	Right-handed alpha
Helix 8	AA8	A	226	232	Right-handed alpha
Helix 9	AA9	A	247	251	Right-handed 310
Helix 10	AB1	A	286	296	Right-handed alpha
Helix 11	AB2	A	322	327	Right-handed alpha
Helix 12	AB3	A	333	337	Right-handed 310
Helix 13	AB4	B	21	34	Right-handed alpha
Helix 14	AB5	B	45	49	Right-handed 310
Helix 15	AB6	B	57	62	Right-handed alpha
Helix 16	AB7	B	84	98	Right-handed alpha
Helix 17	AB8	B	113	120	Right-handed alpha
Helix 18	AB9	B	134	148	Right-handed alpha
Helix 19	AC1	B	164	169	Right-handed alpha
Helix 20	AC2	B	179	198	Right-handed alpha
Helix 21	AC3	B	226	232	Right-handed alpha
Helix 22	AC4	B	286	296	Right-handed alpha
Helix 23	AC5	B	322	327	Right-handed alpha
Helix 24	AC6	B	329	336	Right-handed 310
Helix 25	AC7	F	21	34	Right-handed alpha
Helix 26	AC8	F	45	49	Right-handed 310
Helix 27	AC9	F	57	64	Right-handed alpha
Helix 28	AD1	F	84	98	Right-handed alpha
Helix 29	AD2	F	113	120	Right-handed alpha
Helix 30	AD3	F	134	149	Right-handed alpha
Helix 31	AD4	F	164	169	Right-handed alpha
Helix 32	AD5	F	178	198	Right-handed alpha
Helix 33	AD6	F	226	232	Right-handed alpha
Helix 34	AD7	F	247	251	Right-handed 310
Helix 35	AD8	F	286	298	Right-handed alpha
Helix 36	AD9	F	322	327	Right-handed alpha
Helix 37	AE1	F	329	336	Right-handed 310
Helix 38	AE2	G	21	34	Right-handed alpha
Helix 39	AE3	G	45	49	Right-handed 310
Helix 40	AE4	G	57	62	Right-handed alpha
Helix 41	AE5	G	84	98	Right-handed alpha
Helix 42	AE6	G	113	120	Right-handed alpha
Helix 43	AE7	G	134	149	Right-handed alpha
Helix 44	AE8	G	158	162	Right-handed 310
Helix 45	AE9	G	164	169	Right-handed alpha
Helix 46	AF1	G	179	196	Right-handed alpha
Helix 47	AF2	G	226	232	Right-handed alpha
Helix 48	AF3	G	286	298	Right-handed alpha
Helix 49	AF4	G	322	327	Right-handed alpha
Helix 50	AF5	G	329	332	Right-handed 310
Helix 51	AF6	G	333	338	Right-handed alpha

There are 15 sheets in PDB entry 8AMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	B	127	130	anti-parallel
Strand 3	B	103	106	parallel
Strand 4	B	153	156	parallel
Strand 5	B	201	205	parallel
Strand 6	B	74	78	parallel
Strand 7	B	234	238	parallel
Strand 8	B	251	266	anti-parallel
Strand 9	B	243	248	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	B	127	130	anti-parallel
Strand 3	B	103	106	parallel
Strand 4	B	153	156	parallel
Strand 5	B	201	205	parallel
Strand 6	B	74	78	parallel
Strand 7	B	234	238	parallel
Strand 8	B	251	266	anti-parallel
Strand 9	B	275	280	anti-parallel
Strand 10	B	284	285	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	69	70	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	130	first strand
Strand 2	A	103	106	parallel
Strand 3	A	153	156	parallel
Strand 4	A	201	205	parallel
Strand 5	A	74	78	parallel
Strand 6	A	234	238	parallel
Strand 7	A	254	265	anti-parallel
Strand 8	A	243	245	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	130	first strand
Strand 2	A	103	106	parallel
Strand 3	A	153	156	parallel
Strand 4	A	201	205	parallel
Strand 5	A	74	78	parallel
Strand 6	A	234	238	parallel
Strand 7	A	254	265	anti-parallel
Strand 8	A	274	280	anti-parallel
Strand 9	A	284	285	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	210	first strand
Strand 2	A	220	221	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	F	127	130	anti-parallel
Strand 3	F	103	106	parallel
Strand 4	F	153	156	parallel
Strand 5	F	201	205	parallel
Strand 6	F	74	78	parallel
Strand 7	F	234	238	parallel
Strand 8	F	254	266	anti-parallel
Strand 9	F	243	245	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	F	127	130	anti-parallel
Strand 3	F	103	106	parallel
Strand 4	F	153	156	parallel
Strand 5	F	201	205	parallel
Strand 6	F	74	78	parallel
Strand 7	F	234	238	parallel
Strand 8	F	254	266	anti-parallel
Strand 9	F	275	280	anti-parallel
Strand 10	F	284	285	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	69	70	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	41	first strand
Strand 2	G	127	130	anti-parallel
Strand 3	G	103	106	parallel
Strand 4	G	153	156	parallel
Strand 5	G	201	205	parallel
Strand 6	G	74	78	parallel
Strand 7	G	234	238	parallel
Strand 8	G	251	266	anti-parallel
Strand 9	G	243	248	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	41	first strand
Strand 2	G	127	130	anti-parallel
Strand 3	G	103	106	parallel
Strand 4	G	153	156	parallel
Strand 5	G	201	205	parallel
Strand 6	G	74	78	parallel
Strand 7	G	234	238	parallel
Strand 8	G	251	266	anti-parallel
Strand 9	G	275	280	anti-parallel
Strand 10	G	284	285	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	53	first strand
Strand 2	F	69	70	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	209	210	first strand
Strand 2	F	220	221	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	53	first strand
Strand 2	G	69	70	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	209	210	first strand
Strand 2	G	220	221	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AMF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AMF