Analysis of interatomic Contacts of Structural Units in PDB entry:
8AMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AMO entry

There is 1 chain in PDB entry 8AMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9SER 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8AMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 22Right-handed 310
Helix 2
AA2
A
27 37Right-handed alpha
Helix 3
AA3
A
52 61Right-handed alpha
Helix 4
AA4
A
68 73Right-handed alpha
Helix 5
AA5
A
89 103Right-handed alpha
Helix 6
AA6
A
103 109Right-handed alpha
Helix 7
AA7
A
110 127Right-handed alpha
Helix 8
AA8
A
133 137Right-handed alpha
Helix 9
AA9
A
140 151Right-handed alpha
Helix 10
AB1
A
153 155Right-handed 310
Helix 11
AB2
A
156 171Right-handed alpha
Helix 12
AB3
A
177 201Right-handed alpha
Helix 13
AB4
A
205 210Right-handed alpha
Helix 14
AB5
A
218 233Right-handed alpha
Helix 15
AB6
A
234 250Right-handed alpha
Helix 16
AB7
A
251 259Right-handed alpha
Helix 17
AB8
A
261 276Right-handed alpha
Helix 18
AB9
A
306 311Right-handed alpha
Helix 19
AC1
A
337 341Right-handed 310
Helix 20
AC2
A
344 363Right-handed alpha
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There are 3 sheets in PDB entry 8AMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
47 50anti-parallel
Strand 3
A
302 305parallel
Strand 4
A
282 286anti-parallel
Strand 5
A
66 67anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
389 391anti-parallel
Strand 3
A
367 368anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
295 297anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il