Analysis of interatomic Contacts of Structural Units in PDB entry:
8AMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AMQ entry

There is 1 chain in PDB entry 8AMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -5SER 1393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8AMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 20Right-handed alpha
Helix 2
AA2
A
40 42Right-handed 310
Helix 3
AA3
A
43 54Right-handed alpha
Helix 4
AA4
A
1018 1022Right-handed 310
Helix 5
AA5
A
1027 1039Right-handed alpha
Helix 6
AA6
A
1052 1061Right-handed alpha
Helix 7
AA7
A
1089 1103Right-handed alpha
Helix 8
AA8
A
1103 1109Right-handed alpha
Helix 9
AA9
A
1110 1127Right-handed alpha
Helix 10
AB1
A
1133 1137Right-handed alpha
Helix 11
AB2
A
1140 1151Right-handed alpha
Helix 12
AB3
A
1153 1155Right-handed 310
Helix 13
AB4
A
1156 1171Right-handed alpha
Helix 14
AB5
A
1177 1201Right-handed alpha
Helix 15
AB6
A
1205 1210Right-handed alpha
Helix 16
AB7
A
1218 1234Right-handed alpha
Helix 17
AB8
A
1234 1251Right-handed alpha
Helix 18
AB9
A
1251 1259Right-handed alpha
Helix 19
AC1
A
1261 1276Right-handed alpha
Helix 20
AC2
A
1306 1312Right-handed alpha
Helix 21
AC3
A
1337 1341Right-handed 310
Helix 22
AC4
A
1344 1363Right-handed alpha
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There are 4 sheets in PDB entry 8AMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
1 5anti-parallel
Strand 3
A
59 63anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1041 1044first strand
Strand 2
A
1047 1050anti-parallel
Strand 3
A
1302 1305parallel
Strand 4
A
1282 1286anti-parallel
Strand 5
A
1066 1067anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1130 1132first strand
Strand 2
A
1389 1391anti-parallel
Strand 3
A
1367 1368anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1290 1292first strand
Strand 2
A
1295 1297anti-parallel
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