Analysis of interatomic Contacts of Structural Units in PDB entry:
8AMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AMR entry

There are 3 chains in PDB entry 8AMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 151THR 318
B
 ALA 160LEU 315
C
 ASP 153LEU 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 8AMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
155 256Right-handed alpha
Helix 2
AA2
A
276 284Right-handed alpha
Helix 3
AA3
A
302 311Right-handed alpha
Helix 4
AA4
B
161 261Right-handed alpha
Helix 5
AA5
B
269 284Right-handed alpha
Helix 6
AA6
B
302 311Right-handed alpha
Helix 7
AA7
C
155 170Right-handed alpha
Helix 8
AA8
C
171 254Right-handed alpha
Helix 9
AA9
C
274 284Right-handed alpha
Helix 10
AB1
C
302 311Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 8AMR.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 314first strand
Strand 2
C
299 300anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il