Analysis of interatomic Contacts of Structural Units in PDB entry:
8AMV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AMV entry

There are 6 chains in PDB entry 8AMV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	ARG 203
B	GLU 4	ARG 203
C	LYS 3	ARG 203
D	LYS 5	GLY 204
E	LYS 3	ARG 203
F	GLU 4	ARG 203

There are 69 helices in PDB entry 8AMV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	18	Right-handed 310
Helix 2	AA2	A	21	28	Right-handed alpha
Helix 3	AA3	A	68	80	Right-handed alpha
Helix 4	AA4	A	92	100	Right-handed alpha
Helix 5	AA5	A	104	110	Right-handed alpha
Helix 6	AA6	A	116	120	Right-handed 310
Helix 7	AA7	A	127	131	Right-handed 310
Helix 8	AA8	A	135	153	Right-handed alpha
Helix 9	AA9	A	157	169	Right-handed alpha
Helix 10	AB1	A	170	173	Right-handed 310
Helix 11	AB2	A	175	184	Right-handed alpha
Helix 12	AB3	A	186	202	Right-handed alpha
Helix 13	AB4	B	14	18	Right-handed 310
Helix 14	AB5	B	21	29	Right-handed alpha
Helix 15	AB6	B	67	80	Right-handed alpha
Helix 16	AB7	B	92	100	Right-handed alpha
Helix 17	AB8	B	104	110	Right-handed alpha
Helix 18	AB9	B	116	120	Right-handed 310
Helix 19	AC1	B	127	153	Right-handed alpha
Helix 20	AC2	B	157	169	Right-handed alpha
Helix 21	AC3	B	170	173	Right-handed 310
Helix 22	AC4	B	175	184	Right-handed alpha
Helix 23	AC5	B	186	201	Right-handed alpha
Helix 24	AC6	C	14	18	Right-handed 310
Helix 25	AC7	C	21	28	Right-handed alpha
Helix 26	AC8	C	68	80	Right-handed alpha
Helix 27	AC9	C	81	84	Right-handed 310
Helix 28	AD1	C	92	100	Right-handed alpha
Helix 29	AD2	C	107	111	Right-handed 310
Helix 30	AD3	C	116	120	Right-handed 310
Helix 31	AD4	C	127	131	Right-handed 310
Helix 32	AD5	C	135	153	Right-handed alpha
Helix 33	AD6	C	157	169	Right-handed alpha
Helix 34	AD7	C	170	173	Right-handed 310
Helix 35	AD8	C	175	184	Right-handed alpha
Helix 36	AD9	C	186	202	Right-handed alpha
Helix 37	AE1	D	24	28	Right-handed alpha
Helix 38	AE2	D	67	79	Right-handed alpha
Helix 39	AE3	D	92	100	Right-handed alpha
Helix 40	AE4	D	104	110	Right-handed alpha
Helix 41	AE5	D	127	153	Right-handed alpha
Helix 42	AE6	D	157	169	Right-handed alpha
Helix 43	AE7	D	170	173	Right-handed 310
Helix 44	AE8	D	175	184	Right-handed alpha
Helix 45	AE9	D	186	204	Right-handed alpha
Helix 46	AF1	E	15	18	Right-handed 310
Helix 47	AF2	E	21	29	Right-handed alpha
Helix 48	AF3	E	68	80	Right-handed alpha
Helix 49	AF4	E	92	100	Right-handed alpha
Helix 50	AF5	E	104	109	Right-handed alpha
Helix 51	AF6	E	116	120	Right-handed 310
Helix 52	AF7	E	127	132	Right-handed 310
Helix 53	AF8	E	134	154	Right-handed alpha
Helix 54	AF9	E	157	169	Right-handed alpha
Helix 55	AG1	E	170	173	Right-handed 310
Helix 56	AG2	E	175	184	Right-handed alpha
Helix 57	AG3	E	186	201	Right-handed alpha
Helix 58	AG4	F	14	18	Right-handed 310
Helix 59	AG5	F	21	28	Right-handed alpha
Helix 60	AG6	F	68	80	Right-handed alpha
Helix 61	AG7	F	92	100	Right-handed alpha
Helix 62	AG8	F	104	110	Right-handed alpha
Helix 63	AG9	F	116	120	Right-handed 310
Helix 64	AH1	F	127	131	Right-handed 310
Helix 65	AH2	F	135	153	Right-handed alpha
Helix 66	AH3	F	157	169	Right-handed alpha
Helix 67	AH4	F	170	173	Right-handed 310
Helix 68	AH5	F	175	184	Right-handed alpha
Helix 69	AH6	F	186	201	Right-handed alpha

There are 6 sheets in PDB entry 8AMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	5	13	anti-parallel
Strand 3	A	56	67	anti-parallel
Strand 4	A	33	35	anti-parallel
Strand 5	A	121	123	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	6	13	anti-parallel
Strand 3	B	56	66	anti-parallel
Strand 4	B	33	35	anti-parallel
Strand 5	B	121	123	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	89	first strand
Strand 2	C	5	13	anti-parallel
Strand 3	C	56	67	anti-parallel
Strand 4	C	33	35	anti-parallel
Strand 5	C	121	123	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	89	first strand
Strand 2	D	6	11	anti-parallel
Strand 3	D	58	66	anti-parallel
Strand 4	D	33	35	anti-parallel
Strand 5	D	121	123	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	89	first strand
Strand 2	E	5	13	anti-parallel
Strand 3	E	56	67	anti-parallel
Strand 4	E	33	35	anti-parallel
Strand 5	E	121	123	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	89	first strand
Strand 2	F	5	13	anti-parallel
Strand 3	F	56	67	anti-parallel
Strand 4	F	33	35	anti-parallel
Strand 5	F	121	123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AMV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AMV