Analysis of interatomic Contacts of Structural Units in PDB entry:
8AP1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AP1 entry

There are 4 chains in PDB entry 8AP1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 2SER 340
A
 ILE 386SER 1351
N
 A 107 C 133
T
 G 8 T 34
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 8AP1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
7 12Right-handed alpha
Helix 2
AA2
B
25 37Right-handed alpha
Helix 3
AA3
B
38 41Right-handed 310
Helix 4
AA4
B
44 47Right-handed 310
Helix 5
AA5
B
58 69Right-handed alpha
Helix 6
AA6
B
79 90Right-handed alpha
Helix 7
AA7
B
104 113Right-handed alpha
Helix 8
AA8
B
144 157Right-handed alpha
Helix 9
AA9
B
160 164Right-handed 310
Helix 10
AB1
B
174 181Right-handed alpha
Helix 11
AB2
B
190 200Right-handed alpha
Helix 12
AB3
B
210 215Right-handed 310
Helix 13
AB4
B
217 225Right-handed alpha
Helix 14
AB5
B
255 267Right-handed alpha
Helix 15
AB6
B
277 281Right-handed 310
Helix 16
AB7
B
284 292Right-handed alpha
Helix 17
AB8
B
297 301Right-handed 310
Helix 18
AB9
B
302 306Right-handed 310
Helix 19
AC1
B
307 320Right-handed alpha
Helix 20
AC2
A
387 395Right-handed alpha
Helix 21
AC3
A
397 422Right-handed alpha
Helix 22
AC4
A
422 441Right-handed alpha
Helix 23
AC5
A
449 478Right-handed alpha
Helix 24
AC6
A
491 496Right-handed alpha
Helix 25
AC7
A
496 501Right-handed alpha
Helix 26
AC8
A
504 519Right-handed alpha
Helix 27
AC9
A
531 558Right-handed alpha
Helix 28
AD1
A
593 612Right-handed alpha
Helix 29
AD2
A
652 659Right-handed alpha
Helix 30
AD3
A
703 717Right-handed alpha
Helix 31
AD4
A
719 731Right-handed alpha
Helix 32
AD5
A
738 751Right-handed alpha
Helix 33
AD6
A
775 813Right-handed alpha
Helix 34
AD7
A
842 848Right-handed alpha
Helix 35
AD8
A
857 873Right-handed alpha
Helix 36
AD9
A
879 890Right-handed alpha
Helix 37
AE1
A
890 900Right-handed alpha
Helix 38
AE2
A
906 910Right-handed 310
Helix 39
AE3
A
913 929Right-handed alpha
Helix 40
AE4
A
932 935Right-handed 310
Helix 41
AE5
A
948 959Right-handed alpha
Helix 42
AE6
A
960 967Right-handed alpha
Helix 43
AE7
A
977 995Right-handed alpha
Helix 44
AE8
A
999 1004Right-handed alpha
Helix 45
AE9
A
1013 1019Right-handed alpha
Helix 46
AF1
A
1025 1038Right-handed alpha
Helix 47
AF2
A
1039 1041Right-handed 310
Helix 48
AF3
A
1048 1062Right-handed alpha
Helix 49
AF4
A
1063 1065Right-handed 310
Helix 50
AF5
A
1067 1085Right-handed alpha
Helix 51
AF6
A
1149 1181Right-handed alpha
Helix 52
AF7
A
1197 1214Right-handed alpha
Helix 53
AF8
A
1217 1229Right-handed alpha
Helix 54
AF9
A
1242 1255Right-handed alpha
Helix 55
AG1
A
1264 1280Right-handed alpha
Helix 56
AG2
A
1283 1292Right-handed alpha
Helix 57
AG3
A
1296 1303Right-handed 310
Helix 58
AG4
A
1339 1346Right-handed 310
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There are 11 sheets in PDB entry 8AP1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
72 76parallel
Strand 3
B
49 53parallel
Strand 4
B
128 137parallel
Strand 5
B
165 173parallel
Strand 6
B
242 247anti-parallel
Strand 7
B
203 207anti-parallel
Strand 8
B
227 228parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 530first strand
Strand 2
A
645 651anti-parallel
Strand 3
A
634 640anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
614 619first strand
Strand 2
A
626 631anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
680 684first strand
Strand 2
A
687 689anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
818 819first strand
Strand 2
A
733 736anti-parallel
Strand 3
A
849 851anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
822 824first strand
Strand 2
A
830 832anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
855 856first strand
Strand 2
A
937 938anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1185 1187first strand
Strand 2
A
1190 1193anti-parallel
Strand 3
A
942 946anti-parallel
Strand 4
A
1350 1351anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1087 1088first strand
Strand 2
A
1232 1237anti-parallel
Strand 3
A
1322 1326anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1109 1111first strand
Strand 2
A
1117 1119anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1128 1131first strand
Strand 2
A
1136 1139anti-parallel
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