Analysis of interatomic Contacts of Structural Units in PDB entry:
8AP7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AP7 entry

There are 30 chains in PDB entry 8AP7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 231
C	LEU 29	TYR 92
D	PRO 59	PRO 325
E	GLN 2	LYS 383
F	VAL 2	ARG 136
I	VAL 2	VAL 104
J	THR 2	TYR 169
K	GLY 20	LEU 124
L	LYS 4	VAL 68
M	LEU 16	TYR 144
N	VAL 18	PHE 156
O	PHE 5	PHE 100
P	TYR 26	ILE 105
Q	SER 14	TYR 98
R	MET 1	HIS 62
a	MET 1	VAL 231
c	LEU 29	TYR 92
d	PRO 59	PRO 325
e	GLN 2	LYS 383
f	VAL 2	ARG 136
i	VAL 2	VAL 104
j	THR 2	TYR 169
k	GLY 20	LEU 124
l	LYS 4	VAL 68
m	LEU 16	TYR 144
n	VAL 18	PHE 156
o	PHE 5	PHE 100
p	TYR 26	ILE 105
q	SER 14	TYR 98
r	MET 1	HIS 62

There are201 helices in PDB entry 8AP7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	20	Right-handed alpha
Helix 2	AA2	A	31	35	Right-handed 310
Helix 3	AA3	A	51	68	Right-handed alpha
Helix 4	AA4	A	69	72	Right-handed 310
Helix 5	AA5	A	81	103	Right-handed alpha
Helix 6	AA6	A	105	113	Right-handed 310
Helix 7	AA7	A	124	173	Right-handed alpha
Helix 8	AA8	A	174	178	Right-handed 310
Helix 9	AA9	A	180	223	Right-handed alpha
Helix 10	AB1	C	29	33	Right-handed 310
Helix 11	AB2	C	36	50	Right-handed alpha
Helix 12	AB3	C	50	59	Right-handed alpha
Helix 13	AB4	C	59	90	Right-handed alpha
Helix 14	AB5	D	69	83	Right-handed alpha
Helix 15	AB6	D	98	119	Right-handed alpha
Helix 16	AB7	D	122	130	Right-handed alpha
Helix 17	AB8	D	133	144	Right-handed alpha
Helix 18	AB9	D	220	256	Right-handed alpha
Helix 19	AC1	D	259	267	Right-handed alpha
Helix 20	AC2	D	267	280	Right-handed alpha
Helix 21	AC3	D	287	295	Right-handed alpha
Helix 22	AC4	D	301	322	Right-handed alpha
Helix 23	AC5	E	4	14	Right-handed alpha
Helix 24	AC6	E	14	44	Right-handed alpha
Helix 25	AC7	E	45	51	Right-handed alpha
Helix 26	AC8	E	75	79	Right-handed 310
Helix 27	AC9	E	81	109	Right-handed alpha
Helix 28	AD1	E	112	121	Right-handed alpha
Helix 29	AD2	E	127	131	Right-handed 310
Helix 30	AD3	E	133	167	Right-handed alpha
Helix 31	AD4	E	171	182	Right-handed alpha
Helix 32	AD5	E	190	195	Right-handed alpha
Helix 33	AD6	E	195	203	Right-handed alpha
Helix 34	AD7	E	206	210	Right-handed 310
Helix 35	AD8	E	211	222	Right-handed alpha
Helix 36	AD9	E	231	257	Right-handed alpha
Helix 37	AE1	E	257	262	Right-handed alpha
Helix 38	AE2	E	263	274	Right-handed alpha
Helix 39	AE3	E	278	282	Right-handed 310
Helix 40	AE4	E	284	300	Right-handed alpha
Helix 41	AE5	E	300	307	Right-handed alpha
Helix 42	AE6	E	311	321	Right-handed alpha
Helix 43	AE7	E	322	324	Right-handed 310
Helix 44	AE8	E	332	338	Right-handed 310
Helix 45	AE9	E	341	348	Right-handed 310
Helix 46	AF1	E	350	361	Right-handed alpha
Helix 47	AF2	E	363	383	Right-handed alpha
Helix 48	AF3	F	18	34	Right-handed alpha
Helix 49	AF4	F	48	71	Right-handed alpha
Helix 50	AF5	F	71	84	Right-handed alpha
Helix 51	AF6	F	87	93	Right-handed alpha
Helix 52	AF7	F	95	113	Right-handed alpha
Helix 53	AF8	F	117	121	Right-handed 310
Helix 54	AF9	I	4	9	Right-handed alpha
Helix 55	AG1	I	10	22	Right-handed alpha
Helix 56	AG2	I	23	41	Right-handed alpha
Helix 57	AG3	I	45	53	Right-handed alpha
Helix 58	AG4	I	63	81	Right-handed alpha
Helix 59	AG5	I	86	91	Right-handed alpha
Helix 60	AG6	I	93	104	Right-handed alpha
Helix 61	AG7	J	3	18	Right-handed alpha
Helix 62	AG8	J	19	22	Right-handed 310
Helix 63	AG9	J	23	56	Right-handed alpha
Helix 64	AH1	J	57	65	Right-handed alpha
Helix 65	AH2	J	74	90	Right-handed alpha
Helix 66	AH3	J	97	130	Right-handed alpha
Helix 67	AH4	J	132	145	Right-handed alpha
Helix 68	AH5	J	150	155	Right-handed alpha
Helix 69	AH6	J	160	164	Right-handed 310
Helix 70	AH7	K	33	37	Right-handed 310
Helix 71	AH8	K	48	54	Right-handed 310
Helix 72	AH9	K	55	66	Right-handed alpha
Helix 73	AI1	K	69	86	Right-handed alpha
Helix 74	AI2	K	86	95	Right-handed alpha
Helix 75	AI3	L	10	67	Right-handed alpha
Helix 76	AI4	M	17	34	Right-handed alpha
Helix 77	AI5	M	36	50	Right-handed alpha
Helix 78	AI6	M	52	68	Right-handed alpha
Helix 79	AI7	M	68	85	Right-handed alpha
Helix 80	AI8	M	86	91	Right-handed alpha
Helix 81	AI9	M	93	120	Right-handed alpha
Helix 82	AJ1	M	132	138	Right-handed alpha
Helix 83	AJ2	N	36	40	Right-handed 310
Helix 84	AJ3	N	84	88	Right-handed 310
Helix 85	AJ4	N	99	128	Right-handed alpha
Helix 86	AJ5	N	152	156	Right-handed 310
Helix 87	AJ6	O	11	17	Right-handed alpha
Helix 88	AJ7	O	19	46	Right-handed alpha
Helix 89	AJ8	O	53	70	Right-handed alpha
Helix 90	AJ9	O	76	87	Right-handed alpha
Helix 91	AK1	O	88	98	Right-handed alpha
Helix 92	AK2	P	41	47	Right-handed alpha
Helix 93	AK3	P	51	55	Right-handed 310
Helix 94	AK4	P	79	101	Right-handed alpha
Helix 95	AK5	Q	15	20	Right-handed 310
Helix 96	AK6	Q	32	49	Right-handed alpha
Helix 97	AK7	Q	57	77	Right-handed alpha
Helix 98	AK8	R	10	16	Right-handed 310
Helix 99	AK9	R	17	42	Right-handed alpha
Helix 100	AL1	R	56	62	Right-handed alpha
Helix 101	AL2	a	9	20	Right-handed alpha
Helix 102	AL3	a	31	35	Right-handed 310
Helix 103	AL4	a	51	68	Right-handed alpha
Helix 104	AL5	a	69	72	Right-handed 310
Helix 105	AL6	a	81	103	Right-handed alpha
Helix 106	AL7	a	105	113	Right-handed 310
Helix 107	AL8	a	124	173	Right-handed alpha
Helix 108	AL9	a	174	178	Right-handed 310
Helix 109	AM1	a	180	223	Right-handed alpha
Helix 110	AM2	c	29	33	Right-handed 310
Helix 111	AM3	c	36	50	Right-handed alpha
Helix 112	AM4	c	50	59	Right-handed alpha
Helix 113	AM5	c	59	90	Right-handed alpha
Helix 114	AM6	d	69	83	Right-handed alpha
Helix 115	AM7	d	98	119	Right-handed alpha
Helix 116	AM8	d	122	130	Right-handed alpha
Helix 117	AM9	d	133	144	Right-handed alpha
Helix 118	AN1	d	220	256	Right-handed alpha
Helix 119	AN2	d	259	267	Right-handed alpha
Helix 120	AN3	d	267	280	Right-handed alpha
Helix 121	AN4	d	287	295	Right-handed alpha
Helix 122	AN5	d	301	322	Right-handed alpha
Helix 123	AN6	e	4	14	Right-handed alpha
Helix 124	AN7	e	14	44	Right-handed alpha
Helix 125	AN8	e	45	51	Right-handed alpha
Helix 126	AN9	e	75	79	Right-handed 310
Helix 127	AO1	e	81	109	Right-handed alpha
Helix 128	AO2	e	112	121	Right-handed alpha
Helix 129	AO3	e	127	131	Right-handed 310
Helix 130	AO4	e	133	167	Right-handed alpha
Helix 131	AO5	e	171	182	Right-handed alpha
Helix 132	AO6	e	190	195	Right-handed alpha
Helix 133	AO7	e	195	203	Right-handed alpha
Helix 134	AO8	e	206	210	Right-handed 310
Helix 135	AO9	e	211	222	Right-handed alpha
Helix 136	AP1	e	231	257	Right-handed alpha
Helix 137	AP2	e	257	262	Right-handed alpha
Helix 138	AP3	e	263	274	Right-handed alpha
Helix 139	AP4	e	278	282	Right-handed 310
Helix 140	AP5	e	284	300	Right-handed alpha
Helix 141	AP6	e	300	307	Right-handed alpha
Helix 142	AP7	e	311	321	Right-handed alpha
Helix 143	AP8	e	322	324	Right-handed 310
Helix 144	AP9	e	332	338	Right-handed 310
Helix 145	AQ1	e	341	348	Right-handed 310
Helix 146	AQ2	e	350	361	Right-handed alpha
Helix 147	AQ3	e	363	383	Right-handed alpha
Helix 148	AQ4	f	18	34	Right-handed alpha
Helix 149	AQ5	f	48	71	Right-handed alpha
Helix 150	AQ6	f	71	84	Right-handed alpha
Helix 151	AQ7	f	87	93	Right-handed alpha
Helix 152	AQ8	f	95	113	Right-handed alpha
Helix 153	AQ9	f	117	121	Right-handed 310
Helix 154	AR1	i	4	9	Right-handed alpha
Helix 155	AR2	i	10	22	Right-handed alpha
Helix 156	AR3	i	23	41	Right-handed alpha
Helix 157	AR4	i	45	53	Right-handed alpha
Helix 158	AR5	i	63	81	Right-handed alpha
Helix 159	AR6	i	86	91	Right-handed alpha
Helix 160	AR7	i	93	104	Right-handed alpha
Helix 161	AR8	j	3	18	Right-handed alpha
Helix 162	AR9	j	19	22	Right-handed 310
Helix 163	AS1	j	23	56	Right-handed alpha
Helix 164	AS2	j	57	65	Right-handed alpha
Helix 165	AS3	j	74	90	Right-handed alpha
Helix 166	AS4	j	97	130	Right-handed alpha
Helix 167	AS5	j	132	145	Right-handed alpha
Helix 168	AS6	j	150	155	Right-handed alpha
Helix 169	AS7	j	160	164	Right-handed 310
Helix 170	AS8	k	27	31	Right-handed 310
Helix 171	AS9	k	33	37	Right-handed 310
Helix 172	AT1	k	48	54	Right-handed 310
Helix 173	AT2	k	55	66	Right-handed alpha
Helix 174	AT3	k	69	86	Right-handed alpha
Helix 175	AT4	k	86	95	Right-handed alpha
Helix 176	AT5	l	10	67	Right-handed alpha
Helix 177	AT6	m	17	34	Right-handed alpha
Helix 178	AT7	m	36	50	Right-handed alpha
Helix 179	AT8	m	52	68	Right-handed alpha
Helix 180	AT9	m	68	85	Right-handed alpha
Helix 181	AU1	m	86	91	Right-handed alpha
Helix 182	AU2	m	93	120	Right-handed alpha
Helix 183	AU3	m	132	138	Right-handed alpha
Helix 184	AU4	n	36	40	Right-handed 310
Helix 185	AU5	n	84	88	Right-handed 310
Helix 186	AU6	n	99	128	Right-handed alpha
Helix 187	AU7	n	152	156	Right-handed 310
Helix 188	AU8	o	11	17	Right-handed alpha
Helix 189	AU9	o	19	46	Right-handed alpha
Helix 190	AV1	o	53	70	Right-handed alpha
Helix 191	AV2	o	76	87	Right-handed alpha
Helix 192	AV3	o	88	98	Right-handed alpha
Helix 193	AV4	p	41	47	Right-handed alpha
Helix 194	AV5	p	51	55	Right-handed 310
Helix 195	AV6	p	79	101	Right-handed alpha
Helix 196	AV7	q	15	20	Right-handed 310
Helix 197	AV8	q	32	49	Right-handed alpha
Helix 198	AV9	q	57	77	Right-handed alpha
Helix 199	AW1	r	10	16	Right-handed 310
Helix 200	AW2	r	17	42	Right-handed alpha
Helix 201	AW3	r	56	62	Right-handed alpha

There are 8 sheets in PDB entry 8AP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	Q	25	30	anti-parallel
Strand 3	N	144	145	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	228	229	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	66	70	first strand
Strand 2	N	58	62	anti-parallel
Strand 3	P	35	36	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	27	28	first strand
Strand 2	P	31	32	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	2	5	first strand
Strand 2	q	25	30	anti-parallel
Strand 3	n	144	145	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	43	44	first strand
Strand 2	a	228	229	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	66	70	first strand
Strand 2	n	58	62	anti-parallel
Strand 3	p	35	36	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	27	28	first strand
Strand 2	p	31	32	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AP7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AP7