Analysis of interatomic Contacts of Structural Units in PDB entry:
8AP8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AP8 entry

There are 5 chains in PDB entry 8AP8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	ARG 208	VAL 255
h	SER 21	LYS 157
g	SER 2	LEU 269
c	VAL 71	ILE 114
d	ILE 17	PRO 325

There are 36 helices in PDB entry 8AP8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	230	236	Right-handed alpha
Helix 2	AA2	M	236	254	Right-handed alpha
Helix 3	AA3	h	22	32	Right-handed alpha
Helix 4	AA4	h	44	52	Right-handed alpha
Helix 5	AA5	h	55	65	Right-handed alpha
Helix 6	AA6	h	68	85	Right-handed alpha
Helix 7	AA7	h	88	96	Right-handed alpha
Helix 8	AA8	h	97	99	Right-handed 310
Helix 9	AA9	h	102	123	Right-handed alpha
Helix 10	AB1	h	124	139	Right-handed alpha
Helix 11	AB2	h	141	157	Right-handed alpha
Helix 12	AB3	g	13	29	Right-handed alpha
Helix 13	AB4	g	68	72	Right-handed 310
Helix 14	AB5	g	92	104	Right-handed alpha
Helix 15	AB6	g	107	133	Right-handed alpha
Helix 16	AB7	g	149	166	Right-handed alpha
Helix 17	AB8	g	174	184	Right-handed alpha
Helix 18	AB9	g	185	188	Right-handed 310
Helix 19	AC1	g	196	210	Right-handed alpha
Helix 20	AC2	g	230	246	Right-handed alpha
Helix 21	AC3	g	247	261	Right-handed alpha
Helix 22	AC4	g	264	269	Right-handed alpha
Helix 23	AC5	c	72	91	Right-handed alpha
Helix 24	AC6	c	100	112	Right-handed alpha
Helix 25	AC7	d	35	56	Right-handed alpha
Helix 26	AC8	d	69	85	Right-handed alpha
Helix 27	AC9	d	86	88	Right-handed 310
Helix 28	AD1	d	98	119	Right-handed alpha
Helix 29	AD2	d	125	130	Right-handed alpha
Helix 30	AD3	d	133	164	Right-handed alpha
Helix 31	AD4	d	174	182	Right-handed alpha
Helix 32	AD5	d	184	200	Right-handed alpha
Helix 33	AD6	d	206	218	Right-handed alpha
Helix 34	AD7	d	219	250	Right-handed alpha
Helix 35	AD8	d	291	295	Right-handed alpha
Helix 36	AD9	d	301	324	Right-handed alpha

There are 2 sheets in PDB entry 8AP8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	226	227	first strand
Strand 2	d	171	172	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	32	37	first strand
Strand 2	g	3	9	parallel
Strand 3	g	44	47	parallel
Strand 4	g	224	228	parallel
Strand 5	g	215	219	anti-parallel
Strand 6	g	55	60	anti-parallel
Strand 7	g	77	81	anti-parallel
Strand 8	g	190	193	parallel
Strand 9	g	136	140	parallel
Strand 10	g	168	172	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AP8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AP8