Analysis of interatomic Contacts of Structural Units in PDB entry:
8APL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8APL entry

There are 6 chains in PDB entry 8APL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 321	ILE 782
B	ALA 321	ILE 782
C	ALA 321	ILE 782
D	ALA 321	ILE 782
E	ALA 321	ILE 782
F	ALA 321	ILE 782

There are132 helices in PDB entry 8APL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	324	336	Right-handed alpha
Helix 2	AA2	A	363	372	Right-handed alpha
Helix 3	AA3	A	373	375	Right-handed 310
Helix 4	AA4	A	376	384	Right-handed alpha
Helix 5	AA5	A	385	400	Right-handed alpha
Helix 6	AA6	A	430	435	Right-handed alpha
Helix 7	AA7	A	455	469	Right-handed alpha
Helix 8	AA8	A	475	489	Right-handed alpha
Helix 9	AA9	A	508	521	Right-handed alpha
Helix 10	AB1	A	529	534	Right-handed alpha
Helix 11	AB2	A	541	548	Right-handed alpha
Helix 12	AB3	A	570	577	Right-handed alpha
Helix 13	AB4	A	614	620	Right-handed alpha
Helix 14	AB5	A	654	661	Right-handed alpha
Helix 15	AB6	A	664	680	Right-handed alpha
Helix 16	AB7	A	689	692	Right-handed 310
Helix 17	AB8	A	693	706	Right-handed alpha
Helix 18	AB9	A	713	715	Right-handed 310
Helix 19	AC1	A	716	721	Right-handed alpha
Helix 20	AC2	A	736	747	Right-handed alpha
Helix 21	AC3	A	752	764	Right-handed alpha
Helix 22	AC4	A	778	782	Right-handed 310
Helix 23	AC5	B	324	336	Right-handed alpha
Helix 24	AC6	B	363	372	Right-handed alpha
Helix 25	AC7	B	373	375	Right-handed 310
Helix 26	AC8	B	376	384	Right-handed alpha
Helix 27	AC9	B	385	400	Right-handed alpha
Helix 28	AD1	B	430	435	Right-handed alpha
Helix 29	AD2	B	455	469	Right-handed alpha
Helix 30	AD3	B	475	489	Right-handed alpha
Helix 31	AD4	B	508	521	Right-handed alpha
Helix 32	AD5	B	529	534	Right-handed alpha
Helix 33	AD6	B	541	548	Right-handed alpha
Helix 34	AD7	B	570	577	Right-handed alpha
Helix 35	AD8	B	614	620	Right-handed alpha
Helix 36	AD9	B	654	661	Right-handed alpha
Helix 37	AE1	B	664	680	Right-handed alpha
Helix 38	AE2	B	689	692	Right-handed 310
Helix 39	AE3	B	693	706	Right-handed alpha
Helix 40	AE4	B	713	715	Right-handed 310
Helix 41	AE5	B	716	721	Right-handed alpha
Helix 42	AE6	B	736	747	Right-handed alpha
Helix 43	AE7	B	752	764	Right-handed alpha
Helix 44	AE8	B	778	782	Right-handed 310
Helix 45	AE9	C	324	336	Right-handed alpha
Helix 46	AF1	C	363	372	Right-handed alpha
Helix 47	AF2	C	373	375	Right-handed 310
Helix 48	AF3	C	376	384	Right-handed alpha
Helix 49	AF4	C	385	400	Right-handed alpha
Helix 50	AF5	C	430	435	Right-handed alpha
Helix 51	AF6	C	455	469	Right-handed alpha
Helix 52	AF7	C	475	489	Right-handed alpha
Helix 53	AF8	C	508	521	Right-handed alpha
Helix 54	AF9	C	529	534	Right-handed alpha
Helix 55	AG1	C	541	548	Right-handed alpha
Helix 56	AG2	C	570	577	Right-handed alpha
Helix 57	AG3	C	614	620	Right-handed alpha
Helix 58	AG4	C	654	661	Right-handed alpha
Helix 59	AG5	C	664	680	Right-handed alpha
Helix 60	AG6	C	689	692	Right-handed 310
Helix 61	AG7	C	693	706	Right-handed alpha
Helix 62	AG8	C	713	715	Right-handed 310
Helix 63	AG9	C	716	721	Right-handed alpha
Helix 64	AH1	C	736	747	Right-handed alpha
Helix 65	AH2	C	752	764	Right-handed alpha
Helix 66	AH3	C	778	782	Right-handed 310
Helix 67	AH4	D	324	336	Right-handed alpha
Helix 68	AH5	D	363	372	Right-handed alpha
Helix 69	AH6	D	373	375	Right-handed 310
Helix 70	AH7	D	376	384	Right-handed alpha
Helix 71	AH8	D	385	400	Right-handed alpha
Helix 72	AH9	D	430	435	Right-handed alpha
Helix 73	AI1	D	455	469	Right-handed alpha
Helix 74	AI2	D	475	489	Right-handed alpha
Helix 75	AI3	D	508	521	Right-handed alpha
Helix 76	AI4	D	529	534	Right-handed alpha
Helix 77	AI5	D	541	548	Right-handed alpha
Helix 78	AI6	D	570	577	Right-handed alpha
Helix 79	AI7	D	614	620	Right-handed alpha
Helix 80	AI8	D	654	661	Right-handed alpha
Helix 81	AI9	D	664	680	Right-handed alpha
Helix 82	AJ1	D	689	692	Right-handed 310
Helix 83	AJ2	D	693	706	Right-handed alpha
Helix 84	AJ3	D	713	715	Right-handed 310
Helix 85	AJ4	D	716	721	Right-handed alpha
Helix 86	AJ5	D	736	747	Right-handed alpha
Helix 87	AJ6	D	752	764	Right-handed alpha
Helix 88	AJ7	D	778	782	Right-handed 310
Helix 89	AJ8	E	324	336	Right-handed alpha
Helix 90	AJ9	E	363	372	Right-handed alpha
Helix 91	AK1	E	373	375	Right-handed 310
Helix 92	AK2	E	376	384	Right-handed alpha
Helix 93	AK3	E	385	400	Right-handed alpha
Helix 94	AK4	E	430	435	Right-handed alpha
Helix 95	AK5	E	455	469	Right-handed alpha
Helix 96	AK6	E	475	489	Right-handed alpha
Helix 97	AK7	E	508	521	Right-handed alpha
Helix 98	AK8	E	529	534	Right-handed alpha
Helix 99	AK9	E	541	548	Right-handed alpha
Helix 100	AL1	E	570	577	Right-handed alpha
Helix 101	AL2	E	614	620	Right-handed alpha
Helix 102	AL3	E	654	661	Right-handed alpha
Helix 103	AL4	E	664	680	Right-handed alpha
Helix 104	AL5	E	689	692	Right-handed 310
Helix 105	AL6	E	693	706	Right-handed alpha
Helix 106	AL7	E	713	715	Right-handed 310
Helix 107	AL8	E	716	721	Right-handed alpha
Helix 108	AL9	E	736	747	Right-handed alpha
Helix 109	AM1	E	752	764	Right-handed alpha
Helix 110	AM2	E	778	782	Right-handed 310
Helix 111	AM3	F	324	336	Right-handed alpha
Helix 112	AM4	F	363	372	Right-handed alpha
Helix 113	AM5	F	373	375	Right-handed 310
Helix 114	AM6	F	376	384	Right-handed alpha
Helix 115	AM7	F	385	400	Right-handed alpha
Helix 116	AM8	F	430	435	Right-handed alpha
Helix 117	AM9	F	455	469	Right-handed alpha
Helix 118	AN1	F	475	489	Right-handed alpha
Helix 119	AN2	F	508	521	Right-handed alpha
Helix 120	AN3	F	529	534	Right-handed alpha
Helix 121	AN4	F	541	548	Right-handed alpha
Helix 122	AN5	F	570	577	Right-handed alpha
Helix 123	AN6	F	614	620	Right-handed alpha
Helix 124	AN7	F	654	661	Right-handed alpha
Helix 125	AN8	F	664	680	Right-handed alpha
Helix 126	AN9	F	689	692	Right-handed 310
Helix 127	AO1	F	693	706	Right-handed alpha
Helix 128	AO2	F	713	715	Right-handed 310
Helix 129	AO3	F	716	721	Right-handed alpha
Helix 130	AO4	F	736	747	Right-handed alpha
Helix 131	AO5	F	752	764	Right-handed alpha
Helix 132	AO6	F	778	782	Right-handed 310

There are 42 sheets in PDB entry 8APL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	347	350	anti-parallel
Strand 3	A	355	357	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	414	first strand
Strand 2	A	418	421	anti-parallel
Strand 3	A	427	429	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	527	first strand
Strand 2	A	552	555	parallel
Strand 3	A	599	603	parallel
Strand 4	A	498	502	parallel
Strand 5	A	621	625	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	581	582	first strand
Strand 2	A	594	595	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	631	first strand
Strand 2	A	647	650	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	708	first strand
Strand 2	A	776	777	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	726	728	first strand
Strand 2	A	731	735	anti-parallel
Strand 3	A	772	774	anti-parallel
Strand 4	A	765	766	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	341	first strand
Strand 2	B	347	350	anti-parallel
Strand 3	B	355	357	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	414	first strand
Strand 2	B	418	421	anti-parallel
Strand 3	B	427	429	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	527	first strand
Strand 2	B	552	555	parallel
Strand 3	B	599	603	parallel
Strand 4	B	498	502	parallel
Strand 5	B	621	625	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	581	582	first strand
Strand 2	B	594	595	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	628	631	first strand
Strand 2	B	647	650	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	708	first strand
Strand 2	B	776	777	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	726	728	first strand
Strand 2	B	731	735	anti-parallel
Strand 3	B	772	774	anti-parallel
Strand 4	B	765	766	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	341	first strand
Strand 2	C	347	350	anti-parallel
Strand 3	C	355	357	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	412	414	first strand
Strand 2	C	418	421	anti-parallel
Strand 3	C	427	429	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	524	527	first strand
Strand 2	C	552	555	parallel
Strand 3	C	599	603	parallel
Strand 4	C	498	502	parallel
Strand 5	C	621	625	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	581	582	first strand
Strand 2	C	594	595	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	628	631	first strand
Strand 2	C	647	650	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	707	708	first strand
Strand 2	C	776	777	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	726	728	first strand
Strand 2	C	731	735	anti-parallel
Strand 3	C	772	774	anti-parallel
Strand 4	C	765	766	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	341	first strand
Strand 2	D	347	350	anti-parallel
Strand 3	D	355	357	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	412	414	first strand
Strand 2	D	418	421	anti-parallel
Strand 3	D	427	429	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	524	527	first strand
Strand 2	D	552	555	parallel
Strand 3	D	599	603	parallel
Strand 4	D	498	502	parallel
Strand 5	D	621	625	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	581	582	first strand
Strand 2	D	594	595	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	628	631	first strand
Strand 2	D	647	650	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	707	708	first strand
Strand 2	D	776	777	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	726	728	first strand
Strand 2	D	731	735	anti-parallel
Strand 3	D	772	774	anti-parallel
Strand 4	D	765	766	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	341	first strand
Strand 2	E	347	350	anti-parallel
Strand 3	E	355	357	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	412	414	first strand
Strand 2	E	418	421	anti-parallel
Strand 3	E	427	429	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	524	527	first strand
Strand 2	E	552	555	parallel
Strand 3	E	599	603	parallel
Strand 4	E	498	502	parallel
Strand 5	E	621	625	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	581	582	first strand
Strand 2	E	594	595	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	628	631	first strand
Strand 2	E	647	650	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	707	708	first strand
Strand 2	E	776	777	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	726	728	first strand
Strand 2	E	731	735	anti-parallel
Strand 3	E	772	774	anti-parallel
Strand 4	E	765	766	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	341	first strand
Strand 2	F	347	350	anti-parallel
Strand 3	F	355	357	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	412	414	first strand
Strand 2	F	418	421	anti-parallel
Strand 3	F	427	429	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	524	527	first strand
Strand 2	F	552	555	parallel
Strand 3	F	599	603	parallel
Strand 4	F	498	502	parallel
Strand 5	F	621	625	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	581	582	first strand
Strand 2	F	594	595	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	628	631	first strand
Strand 2	F	647	650	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	707	708	first strand
Strand 2	F	776	777	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	726	728	first strand
Strand 2	F	731	735	anti-parallel
Strand 3	F	772	774	anti-parallel
Strand 4	F	765	766	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8APL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8APL