Analysis of interatomic Contacts of Structural Units in PDB entry:
8APP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8APP entry

There are 4 chains in PDB entry 8APP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2	HIS 188
B	MET 1	HIS 189
C	MET 1	HIS 190
D	MET 1	HIS 188

There are 41 helices in PDB entry 8APP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	15	Right-handed alpha
Helix 2	AA2	A	19	33	Right-handed alpha
Helix 3	AA3	A	41	50	Right-handed alpha
Helix 4	AA4	A	88	100	Right-handed alpha
Helix 5	AA5	A	100	111	Right-handed alpha
Helix 6	AA6	A	116	131	Right-handed alpha
Helix 7	AA7	A	131	137	Right-handed alpha
Helix 8	AA8	A	138	145	Right-handed alpha
Helix 9	AA9	A	150	156	Right-handed alpha
Helix 10	AB1	A	171	186	Right-handed alpha
Helix 11	AB2	B	3	14	Right-handed alpha
Helix 12	AB3	B	19	34	Right-handed alpha
Helix 13	AB4	B	41	50	Right-handed alpha
Helix 14	AB5	B	88	100	Right-handed alpha
Helix 15	AB6	B	100	111	Right-handed alpha
Helix 16	AB7	B	116	131	Right-handed alpha
Helix 17	AB8	B	131	137	Right-handed alpha
Helix 18	AB9	B	138	146	Right-handed alpha
Helix 19	AC1	B	148	156	Right-handed alpha
Helix 20	AC2	B	157	159	Right-handed 310
Helix 21	AC3	B	171	186	Right-handed alpha
Helix 22	AC4	C	3	14	Right-handed alpha
Helix 23	AC5	C	19	34	Right-handed alpha
Helix 24	AC6	C	41	50	Right-handed alpha
Helix 25	AC7	C	88	100	Right-handed alpha
Helix 26	AC8	C	100	111	Right-handed alpha
Helix 27	AC9	C	116	131	Right-handed alpha
Helix 28	AD1	C	131	138	Right-handed alpha
Helix 29	AD2	C	138	146	Right-handed alpha
Helix 30	AD3	C	148	156	Right-handed alpha
Helix 31	AD4	C	157	159	Right-handed 310
Helix 32	AD5	C	173	186	Right-handed alpha
Helix 33	AD6	D	3	14	Right-handed alpha
Helix 34	AD7	D	19	34	Right-handed alpha
Helix 35	AD8	D	41	50	Right-handed alpha
Helix 36	AD9	D	88	111	Right-handed alpha
Helix 37	AE1	D	116	137	Right-handed alpha
Helix 38	AE2	D	138	145	Right-handed alpha
Helix 39	AE3	D	148	156	Right-handed alpha
Helix 40	AE4	D	157	159	Right-handed 310
Helix 41	AE5	D	173	186	Right-handed alpha

There are 8 sheets in PDB entry 8APP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	60	first strand
Strand 2	A	66	69	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	164	first strand
Strand 2	A	167	170	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	60	first strand
Strand 2	B	66	69	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	167	170	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	60	first strand
Strand 2	C	66	69	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	164	first strand
Strand 2	C	167	170	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	60	first strand
Strand 2	D	66	69	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	164	first strand
Strand 2	D	167	170	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8APP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8APP