Analysis of interatomic Contacts of Structural Units in PDB entry:
8APR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8APR entry

There are 3 chains in PDB entry 8APR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2PRO 405
B
 LYS 2PRO 405
C
 LYS 2PRO 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8APR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 29Right-handed alpha
Helix 2
AA2
A
57 64Right-handed alpha
Helix 3
AA3
A
76 88Right-handed alpha
Helix 4
AA4
A
104 107Right-handed 310
Helix 5
AA5
A
108 113Right-handed alpha
Helix 6
AA6
A
134 139Right-handed alpha
Helix 7
AA7
A
140 142Right-handed 310
Helix 8
AA8
A
143 148Right-handed alpha
Helix 9
AA9
A
162 187Right-handed alpha
Helix 10
AB1
A
196 207Right-handed alpha
Helix 11
AB2
A
208 215Right-handed alpha
Helix 12
AB3
A
249 260Right-handed alpha
Helix 13
AB4
A
262 274Right-handed alpha
Helix 14
AB5
A
279 286Right-handed alpha
Helix 15
AB6
A
286 300Right-handed alpha
Helix 16
AB7
A
302 314Right-handed alpha
Helix 17
AB8
A
322 330Right-handed alpha
Helix 18
AB9
A
331 334Right-handed 310
Helix 19
AC1
A
377 385Right-handed alpha
Helix 20
AC2
A
389 399Right-handed alpha
Helix 21
AC3
B
17 28Right-handed alpha
Helix 22
AC4
B
57 64Right-handed alpha
Helix 23
AC5
B
76 89Right-handed alpha
Helix 24
AC6
B
104 107Right-handed 310
Helix 25
AC7
B
108 113Right-handed alpha
Helix 26
AC8
B
134 139Right-handed alpha
Helix 27
AC9
B
140 142Right-handed 310
Helix 28
AD1
B
143 148Right-handed alpha
Helix 29
AD2
B
162 187Right-handed alpha
Helix 30
AD3
B
196 207Right-handed alpha
Helix 31
AD4
B
208 217Right-handed alpha
Helix 32
AD5
B
249 260Right-handed alpha
Helix 33
AD6
B
262 274Right-handed alpha
Helix 34
AD7
B
279 286Right-handed alpha
Helix 35
AD8
B
286 300Right-handed alpha
Helix 36
AD9
B
302 314Right-handed alpha
Helix 37
AE1
B
322 330Right-handed alpha
Helix 38
AE2
B
331 334Right-handed 310
Helix 39
AE3
B
377 385Right-handed alpha
Helix 40
AE4
B
389 399Right-handed alpha
Helix 41
AE5
C
17 29Right-handed alpha
Helix 42
AE6
C
57 64Right-handed alpha
Helix 43
AE7
C
76 88Right-handed alpha
Helix 44
AE8
C
104 107Right-handed 310
Helix 45
AE9
C
108 113Right-handed alpha
Helix 46
AF1
C
134 139Right-handed alpha
Helix 47
AF2
C
140 142Right-handed 310
Helix 48
AF3
C
143 148Right-handed alpha
Helix 49
AF4
C
162 187Right-handed alpha
Helix 50
AF5
C
196 207Right-handed alpha
Helix 51
AF6
C
208 215Right-handed alpha
Helix 52
AF7
C
249 260Right-handed alpha
Helix 53
AF8
C
262 274Right-handed alpha
Helix 54
AF9
C
279 286Right-handed alpha
Helix 55
AG1
C
286 300Right-handed alpha
Helix 56
AG2
C
302 314Right-handed alpha
Helix 57
AG3
C
322 330Right-handed alpha
Helix 58
AG4
C
331 334Right-handed 310
Helix 59
AG5
C
377 385Right-handed alpha
Helix 60
AG6
C
389 399Right-handed alpha
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There are 9 sheets in PDB entry 8APR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 403first strand
Strand 2
A
68 72anti-parallel
Strand 3
A
32 37parallel
Strand 4
A
9 13parallel
Strand 5
A
96 99parallel
Strand 6
A
120 125parallel
Strand 7
A
191 195parallel
Strand 8
B
359 360anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 236first strand
Strand 2
A
242 247anti-parallel
Strand 3
A
317 319anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 345first strand
Strand 2
A
349 354anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 360first strand
Strand 2
B
190 195anti-parallel
Strand 3
B
120 125parallel
Strand 4
B
96 99parallel
Strand 5
B
9 13parallel
Strand 6
B
32 38parallel
Strand 7
B
68 72parallel
Strand 8
B
402 403anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 236first strand
Strand 2
B
242 247anti-parallel
Strand 3
B
317 319anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 345first strand
Strand 2
B
349 354anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 195first strand
Strand 2
C
120 125parallel
Strand 3
C
96 99parallel
Strand 4
C
9 13parallel
Strand 5
C
32 38parallel
Strand 6
C
68 72parallel
Strand 7
C
402 403anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
231 236first strand
Strand 2
C
242 247anti-parallel
Strand 3
C
317 319anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
340 345first strand
Strand 2
C
349 354anti-parallel
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