Analysis of interatomic Contacts of Structural Units in PDB entry:
8APZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8APZ entry

There are 2 chains in PDB entry 8APZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5GLU 416
B
 ASN 7GLU 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8APZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 23Right-handed alpha
Helix 2
AA2
A
39 56Right-handed alpha
Helix 3
AA3
A
99 116Right-handed alpha
Helix 4
AA4
A
141 148Right-handed alpha
Helix 5
AA5
A
152 159Right-handed alpha
Helix 6
AA6
A
166 174Right-handed alpha
Helix 7
AA7
A
199 205Right-handed alpha
Helix 8
AA8
A
235 239Right-handed 310
Helix 9
AA9
A
241 259Right-handed alpha
Helix 10
AB1
A
295 317Right-handed alpha
Helix 11
AB2
A
335 350Right-handed alpha
Helix 12
AB3
A
362 371Right-handed alpha
Helix 13
AB4
A
380 384Right-handed 310
Helix 14
AB5
A
393 413Right-handed alpha
Helix 15
AB6
B
11 23Right-handed alpha
Helix 16
AB7
B
39 56Right-handed alpha
Helix 17
AB8
B
99 117Right-handed alpha
Helix 18
AB9
B
141 148Right-handed alpha
Helix 19
AC1
B
152 158Right-handed alpha
Helix 20
AC2
B
166 174Right-handed alpha
Helix 21
AC3
B
199 205Right-handed alpha
Helix 22
AC4
B
235 239Right-handed 310
Helix 23
AC5
B
241 260Right-handed alpha
Helix 24
AC6
B
295 317Right-handed alpha
Helix 25
AC7
B
335 350Right-handed alpha
Helix 26
AC8
B
362 371Right-handed alpha
Helix 27
AC9
B
380 384Right-handed 310
Helix 28
AD1
B
393 413Right-handed alpha
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There are 8 sheets in PDB entry 8APZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
68 72anti-parallel
Strand 3
A
124 128anti-parallel
Strand 4
A
82 86parallel
Strand 5
A
189 195parallel
Strand 6
A
373 378parallel
Strand 7
A
208 214anti-parallel
Strand 8
A
332 333anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
68 72anti-parallel
Strand 3
A
124 128anti-parallel
Strand 4
A
82 86parallel
Strand 5
A
189 195parallel
Strand 6
A
373 378parallel
Strand 7
A
208 214anti-parallel
Strand 8
A
353 358parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
414 415anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 274first strand
Strand 2
A
284 293anti-parallel
Strand 3
A
216 225anti-parallel
Strand 4
A
320 329anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
68 72anti-parallel
Strand 3
B
124 128anti-parallel
Strand 4
B
82 86parallel
Strand 5
B
189 195parallel
Strand 6
B
373 378parallel
Strand 7
B
208 214anti-parallel
Strand 8
B
332 333anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
68 72anti-parallel
Strand 3
B
124 128anti-parallel
Strand 4
B
82 86parallel
Strand 5
B
189 195parallel
Strand 6
B
373 378parallel
Strand 7
B
208 214anti-parallel
Strand 8
B
353 358parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
414 415anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 274first strand
Strand 2
B
284 293anti-parallel
Strand 3
B
216 225anti-parallel
Strand 4
B
320 329anti-parallel
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