Analysis of interatomic Contacts of Structural Units in PDB entry:
8AQ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AQ0 entry

There are 2 chains in PDB entry 8AQ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 6	VAL 415
B	GLU 6	VAL 415

There are 28 helices in PDB entry 8AQ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	24	Right-handed alpha
Helix 2	AA2	A	39	56	Right-handed alpha
Helix 3	AA3	A	99	116	Right-handed alpha
Helix 4	AA4	A	141	148	Right-handed alpha
Helix 5	AA5	A	152	158	Right-handed alpha
Helix 6	AA6	A	166	174	Right-handed alpha
Helix 7	AA7	A	199	204	Right-handed alpha
Helix 8	AA8	A	235	239	Right-handed 310
Helix 9	AA9	A	241	259	Right-handed alpha
Helix 10	AB1	A	295	317	Right-handed alpha
Helix 11	AB2	A	335	350	Right-handed alpha
Helix 12	AB3	A	362	371	Right-handed alpha
Helix 13	AB4	A	380	384	Right-handed 310
Helix 14	AB5	A	393	413	Right-handed alpha
Helix 15	AB6	B	11	23	Right-handed alpha
Helix 16	AB7	B	39	56	Right-handed alpha
Helix 17	AB8	B	99	116	Right-handed alpha
Helix 18	AB9	B	141	148	Right-handed alpha
Helix 19	AC1	B	152	158	Right-handed alpha
Helix 20	AC2	B	166	175	Right-handed alpha
Helix 21	AC3	B	199	205	Right-handed alpha
Helix 22	AC4	B	235	239	Right-handed 310
Helix 23	AC5	B	241	259	Right-handed alpha
Helix 24	AC6	B	295	316	Right-handed alpha
Helix 25	AC7	B	335	350	Right-handed alpha
Helix 26	AC8	B	362	371	Right-handed alpha
Helix 27	AC9	B	380	384	Right-handed 310
Helix 28	AD1	B	393	413	Right-handed alpha

There are 11 sheets in PDB entry 8AQ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	68	72	anti-parallel
Strand 3	A	124	128	anti-parallel
Strand 4	A	82	86	parallel
Strand 5	A	189	195	parallel
Strand 6	A	373	378	parallel
Strand 7	A	208	214	anti-parallel
Strand 8	A	332	333	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	68	72	anti-parallel
Strand 3	A	124	128	anti-parallel
Strand 4	A	82	86	parallel
Strand 5	A	189	195	parallel
Strand 6	A	373	378	parallel
Strand 7	A	208	214	anti-parallel
Strand 8	A	353	358	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	A	414	415	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	268	first strand
Strand 2	A	284	293	anti-parallel
Strand 3	A	272	274	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	268	first strand
Strand 2	A	284	293	anti-parallel
Strand 3	A	216	225	anti-parallel
Strand 4	A	320	329	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	230	first strand
Strand 2	A	280	281	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	68	72	anti-parallel
Strand 3	B	124	128	anti-parallel
Strand 4	B	82	86	parallel
Strand 5	B	189	195	parallel
Strand 6	B	373	378	parallel
Strand 7	B	208	214	anti-parallel
Strand 8	B	332	333	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	68	72	anti-parallel
Strand 3	B	124	128	anti-parallel
Strand 4	B	82	86	parallel
Strand 5	B	189	195	parallel
Strand 6	B	373	378	parallel
Strand 7	B	208	214	anti-parallel
Strand 8	B	353	358	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	268	first strand
Strand 2	B	284	293	anti-parallel
Strand 3	B	272	274	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	268	first strand
Strand 2	B	284	293	anti-parallel
Strand 3	B	216	225	anti-parallel
Strand 4	B	320	329	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	230	first strand
Strand 2	B	280	281	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AQ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AQ0