Analysis of interatomic Contacts of Structural Units in PDB entry:
8AQN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AQN entry

There are 4 chains in PDB entry 8AQN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 202TYR 477
B
 ALA 209TYR 477
C
 SER 2345TRP 2365
D
 GLY 2349GLY 2360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8AQN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
205 226Right-handed alpha
Helix 2
AA2
A
229 238Right-handed alpha
Helix 3
AA3
A
251 256Right-handed alpha
Helix 4
AA4
A
261 265Right-handed 310
Helix 5
AA5
A
274 289Right-handed alpha
Helix 6
AA6
A
289 303Right-handed alpha
Helix 7
AA7
A
305 309Right-handed 310
Helix 8
AA8
A
310 333Right-handed alpha
Helix 9
AA9
A
350 355Right-handed alpha
Helix 10
AB1
A
359 363Right-handed 310
Helix 11
AB2
A
364 377Right-handed alpha
Helix 12
AB3
A
380 393Right-handed alpha
Helix 13
AB4
A
402 425Right-handed alpha
Helix 14
AB5
A
430 458Right-handed alpha
Helix 15
AB6
A
466 474Right-handed alpha
Helix 16
AB7
B
210 226Right-handed alpha
Helix 17
AB8
B
229 239Right-handed alpha
Helix 18
AB9
B
251 259Right-handed alpha
Helix 19
AC1
B
260 262Right-handed 310
Helix 20
AC2
B
279 281Right-handed 310
Helix 21
AC3
B
282 302Right-handed alpha
Helix 22
AC4
B
305 309Right-handed 310
Helix 23
AC5
B
310 333Right-handed alpha
Helix 24
AC6
B
342 344Right-handed 310
Helix 25
AC7
B
350 355Right-handed alpha
Helix 26
AC8
B
359 363Right-handed 310
Helix 27
AC9
B
364 376Right-handed alpha
Helix 28
AD1
B
380 393Right-handed alpha
Helix 29
AD2
B
402 425Right-handed alpha
Helix 30
AD3
B
430 458Right-handed alpha
Helix 31
AD4
B
462 464Right-handed 310
Helix 32
AD5
B
465 474Right-handed alpha
Helix 33
AD6
C
2347 2360Right-handed alpha
Helix 34
AD7
C
2361 2365Right-handed 310
Helix 35
AD8
D
2350 2360Right-handed alpha
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There are 3 sheets in PDB entry 8AQN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
346 349parallel
Strand 3
A
338 341anti-parallel
Strand 4
A
334 335anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
462 463anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 249first strand
Strand 2
B
346 349parallel
Strand 3
B
338 341anti-parallel
Strand 4
B
334 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il