Analysis of interatomic Contacts of Structural Units in PDB entry:
8AQS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AQS entry

There are 2 chains in PDB entry 8AQS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 333CYS 525
B
 SER 19TYR 613
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8AQS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
364 371Right-handed 310
Helix 2
AA2
A
406 410Right-handed 310
Helix 3
AA3
A
438 443Right-handed alpha
Helix 4
AA4
A
502 506Right-handed 310
Helix 5
AA5
B
20 53Right-handed alpha
Helix 6
AA6
B
56 81Right-handed alpha
Helix 7
AA7
B
90 101Right-handed alpha
Helix 8
AA8
B
109 130Right-handed alpha
Helix 9
AA9
B
147 154Right-handed alpha
Helix 10
AB1
B
157 194Right-handed alpha
Helix 11
AB2
B
198 205Right-handed alpha
Helix 12
AB3
B
206 208Right-handed 310
Helix 13
AB4
B
220 252Right-handed alpha
Helix 14
AB5
B
265 267Right-handed 310
Helix 15
AB6
B
275 279Right-handed 310
Helix 16
AB7
B
293 300Right-handed alpha
Helix 17
AB8
B
303 311Right-handed alpha
Helix 18
AB9
B
311 319Right-handed alpha
Helix 19
AC1
B
324 331Right-handed alpha
Helix 20
AC2
B
365 385Right-handed alpha
Helix 21
AC3
B
389 393Right-handed 310
Helix 22
AC4
B
400 412Right-handed alpha
Helix 23
AC5
B
414 421Right-handed alpha
Helix 24
AC6
B
431 444Right-handed alpha
Helix 25
AC7
B
449 466Right-handed alpha
Helix 26
AC8
B
469 471Right-handed 310
Helix 27
AC9
B
472 484Right-handed alpha
Helix 28
AD1
B
499 502Right-handed 310
Helix 29
AD2
B
503 508Right-handed alpha
Helix 30
AD3
B
513 533Right-handed alpha
Helix 31
AD4
B
538 542Right-handed 310
Helix 32
AD5
B
547 559Right-handed alpha
Helix 33
AD6
B
565 574Right-handed alpha
Helix 34
AD7
B
581 599Right-handed alpha
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There are 5 sheets in PDB entry 8AQS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 358first strand
Strand 2
A
394 402anti-parallel
Strand 3
A
508 516anti-parallel
Strand 4
A
431 437anti-parallel
Strand 5
A
376 380anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
492 494anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 474first strand
Strand 2
A
488 489anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
487 488parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 352first strand
Strand 2
B
355 359anti-parallel
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