Analysis of interatomic Contacts of Structural Units in PDB entry:
8AQT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AQT entry

There are 2 chains in PDB entry 8AQT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 20PHE 603
B
 THR 333CYS 525
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8AQT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 53Right-handed alpha
Helix 2
AA2
A
56 80Right-handed alpha
Helix 3
AA3
A
93 102Right-handed alpha
Helix 4
AA4
A
111 117Right-handed alpha
Helix 5
AA5
A
119 129Right-handed alpha
Helix 6
AA6
A
145 153Right-handed alpha
Helix 7
AA7
A
165 173Right-handed alpha
Helix 8
AA8
A
175 187Right-handed alpha
Helix 9
AA9
A
187 193Right-handed alpha
Helix 10
AB1
A
198 205Right-handed alpha
Helix 11
AB2
A
220 230Right-handed alpha
Helix 12
AB3
A
234 239Right-handed alpha
Helix 13
AB4
A
239 252Right-handed alpha
Helix 14
AB5
A
292 298Right-handed alpha
Helix 15
AB6
A
303 308Right-handed alpha
Helix 16
AB7
A
308 319Right-handed alpha
Helix 17
AB8
A
324 330Right-handed alpha
Helix 18
AB9
A
366 383Right-handed alpha
Helix 19
AC1
A
388 393Right-handed alpha
Helix 20
AC2
A
399 413Right-handed alpha
Helix 21
AC3
A
414 421Right-handed alpha
Helix 22
AC4
A
433 446Right-handed alpha
Helix 23
AC5
A
449 464Right-handed alpha
Helix 24
AC6
A
472 485Right-handed alpha
Helix 25
AC7
A
513 531Right-handed alpha
Helix 26
AC8
A
548 559Right-handed alpha
Helix 27
AC9
A
560 564Right-handed 310
Helix 28
AD1
A
565 574Right-handed alpha
Helix 29
AD2
A
581 589Right-handed alpha
Helix 30
AD3
A
592 598Right-handed alpha
Helix 31
AD4
B
337 343Right-handed alpha
Helix 32
AD5
B
365 370Right-handed alpha
Helix 33
AD6
B
383 388Right-handed alpha
Helix 34
AD7
B
405 408Right-handed 310
Helix 35
AD8
B
416 422Right-handed alpha
Helix 36
AD9
B
502 505Right-handed 310
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There are 2 sheets in PDB entry 8AQT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 349first strand
Strand 2
A
357 359anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 358first strand
Strand 2
B
394 403anti-parallel
Strand 3
B
507 516anti-parallel
Strand 4
B
432 437anti-parallel
Strand 5
B
376 378anti-parallel
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