Analysis of interatomic Contacts of Structural Units in PDB entry:
8AR6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AR6 entry

There are 3 chains in PDB entry 8AR6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 13	ASP 183
B	SER 12	ASP 183
C	VAL 15	ASP 183

There are 12 helices in PDB entry 8AR6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	28	Right-handed 310
Helix 2	AA2	A	29	34	Right-handed alpha
Helix 3	AA3	A	51	55	Right-handed alpha
Helix 4	AA4	A	57	66	Right-handed alpha
Helix 5	AA5	B	21	28	Right-handed 310
Helix 6	AA6	B	29	35	Right-handed alpha
Helix 7	AA7	B	51	55	Right-handed alpha
Helix 8	AA8	B	57	66	Right-handed alpha
Helix 9	AA9	C	21	28	Right-handed 310
Helix 10	AB1	C	29	36	Right-handed alpha
Helix 11	AB2	C	51	55	Right-handed alpha
Helix 12	AB3	C	57	66	Right-handed alpha

There are 6 sheets in PDB entry 8AR6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	50	first strand
Strand 2	A	171	181	anti-parallel
Strand 3	A	72	78	anti-parallel
Strand 4	A	83	88	anti-parallel
Strand 5	A	105	108	anti-parallel
Strand 6	A	114	116	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	50	first strand
Strand 2	A	171	181	anti-parallel
Strand 3	A	152	154	anti-parallel
Strand 4	A	144	147	anti-parallel
Strand 5	A	132	135	anti-parallel
Strand 6	A	126	128	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	50	first strand
Strand 2	B	171	181	anti-parallel
Strand 3	B	72	78	anti-parallel
Strand 4	B	83	88	anti-parallel
Strand 5	B	105	108	anti-parallel
Strand 6	B	114	116	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	50	first strand
Strand 2	B	171	181	anti-parallel
Strand 3	B	152	154	anti-parallel
Strand 4	B	144	147	anti-parallel
Strand 5	B	132	135	anti-parallel
Strand 6	B	126	128	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	50	first strand
Strand 2	C	171	181	anti-parallel
Strand 3	C	72	78	anti-parallel
Strand 4	C	83	88	anti-parallel
Strand 5	C	105	108	anti-parallel
Strand 6	C	114	116	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	50	first strand
Strand 2	C	171	181	anti-parallel
Strand 3	C	152	154	anti-parallel
Strand 4	C	144	147	anti-parallel
Strand 5	C	132	135	anti-parallel
Strand 6	C	126	128	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AR6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AR6