Analysis of interatomic Contacts of Structural Units in PDB entry:
8ARE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ARE entry

There are 2 chains in PDB entry 8ARE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 18LYS 525
B
 SER 1THR 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8ARE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 51Right-handed alpha
Helix 2
AA2
A
97 110Right-handed alpha
Helix 3
AA3
A
111 114Right-handed 310
Helix 4
AA4
A
117 122Right-handed 310
Helix 5
AA5
A
126 133Right-handed alpha
Helix 6
AA6
A
136 140Right-handed 310
Helix 7
AA7
A
160 165Right-handed alpha
Helix 8
AA8
A
166 171Right-handed 310
Helix 9
AA9
A
174 181Right-handed alpha
Helix 10
AB1
A
183 187Right-handed 310
Helix 11
AB2
A
219 223Right-handed 310
Helix 12
AB3
A
235 245Right-handed alpha
Helix 13
AB4
A
259 261Right-handed 310
Helix 14
AB5
A
262 269Right-handed alpha
Helix 15
AB6
A
294 304Right-handed alpha
Helix 16
AB7
A
306 314Right-handed alpha
Helix 17
AB8
A
333 338Right-handed 310
Helix 18
AB9
A
345 360Right-handed alpha
Helix 19
AC1
A
364 368Right-handed 310
Helix 20
AC2
A
378 397Right-handed alpha
Helix 21
AC3
A
406 416Right-handed alpha
Helix 22
AC4
A
432 441Right-handed 310
Helix 23
AC5
A
454 467Right-handed alpha
Helix 24
AC6
A
469 488Right-handed alpha
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There are 6 sheets in PDB entry 8ARE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
227 231parallel
Strand 3
A
208 213anti-parallel
Strand 4
A
198 204anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
63 65anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 73first strand
Strand 2
A
79 84anti-parallel
Strand 3
A
149 153anti-parallel
Strand 4
A
142 146anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 252first strand
Strand 2
A
490 502anti-parallel
Strand 3
A
320 321anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 252first strand
Strand 2
A
490 502anti-parallel
Strand 3
A
273 285anti-parallel
Strand 4
A
421 427anti-parallel
Strand 5
A
372 376parallel
Strand 6
A
401 405parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 507first strand
Strand 2
A
523 524anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il