Analysis of interatomic Contacts of Structural Units in PDB entry:
8ARK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ARK entry

There are 3 chains in PDB entry 8ARK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 57ARG 496
B
 GLU 57ARG 496
C
 GLU 57LEU 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 8ARK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 70Right-handed 310
Helix 2
AA2
A
91 97Right-handed alpha
Helix 3
AA3
A
114 118Right-handed 310
Helix 4
AA4
A
121 130Right-handed alpha
Helix 5
AA5
A
137 149Right-handed alpha
Helix 6
AA6
A
163 176Right-handed alpha
Helix 7
AA7
A
195 209Right-handed alpha
Helix 8
AA8
A
243 250Right-handed alpha
Helix 9
AA9
A
268 275Right-handed alpha
Helix 10
AB1
A
277 286Right-handed alpha
Helix 11
AB2
A
302 313Right-handed alpha
Helix 12
AB3
A
343 356Right-handed alpha
Helix 13
AB4
A
370 381Right-handed alpha
Helix 14
AB5
A
382 384Right-handed 310
Helix 15
AB6
A
440 448Right-handed alpha
Helix 16
AB7
A
449 451Right-handed 310
Helix 17
AB8
A
465 467Right-handed 310
Helix 18
AB9
A
468 480Right-handed alpha
Helix 19
AC1
A
490 494Right-handed 310
Helix 20
AC2
B
66 70Right-handed 310
Helix 21
AC3
B
91 97Right-handed alpha
Helix 22
AC4
B
114 118Right-handed 310
Helix 23
AC5
B
121 130Right-handed alpha
Helix 24
AC6
B
137 149Right-handed alpha
Helix 25
AC7
B
163 177Right-handed alpha
Helix 26
AC8
B
195 211Right-handed alpha
Helix 27
AC9
B
232 236Right-handed 310
Helix 28
AD1
B
243 248Right-handed alpha
Helix 29
AD2
B
268 275Right-handed alpha
Helix 30
AD3
B
277 286Right-handed alpha
Helix 31
AD4
B
302 313Right-handed alpha
Helix 32
AD5
B
340 342Right-handed 310
Helix 33
AD6
B
343 357Right-handed alpha
Helix 34
AD7
B
370 379Right-handed alpha
Helix 35
AD8
B
395 400Right-handed alpha
Helix 36
AD9
B
440 448Right-handed alpha
Helix 37
AE1
B
449 451Right-handed 310
Helix 38
AE2
B
465 467Right-handed 310
Helix 39
AE3
B
468 473Right-handed alpha
Helix 40
AE4
B
475 480Right-handed alpha
Helix 41
AE5
B
490 494Right-handed 310
Helix 42
AE6
C
90 99Right-handed alpha
Helix 43
AE7
C
115 119Right-handed 310
Helix 44
AE8
C
121 130Right-handed alpha
Helix 45
AE9
C
137 150Right-handed alpha
Helix 46
AF1
C
163 178Right-handed alpha
Helix 47
AF2
C
195 211Right-handed alpha
Helix 48
AF3
C
225 233Right-handed alpha
Helix 49
AF4
C
243 253Right-handed alpha
Helix 50
AF5
C
268 274Right-handed alpha
Helix 51
AF6
C
277 287Right-handed alpha
Helix 52
AF7
C
302 313Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8ARK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
316 320anti-parallel
Strand 3
A
152 156parallel
Strand 4
A
293 298parallel
Strand 5
A
263 266parallel
Strand 6
A
189 192parallel
Strand 7
A
239 242parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 338first strand
Strand 2
A
458 464parallel
Strand 3
A
432 434parallel
Strand 4
A
364 366parallel
Strand 5
A
413 416parallel
Strand 6
A
387 389parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 104first strand
Strand 2
B
316 320anti-parallel
Strand 3
B
152 156parallel
Strand 4
B
293 298parallel
Strand 5
B
263 266parallel
Strand 6
B
189 192parallel
Strand 7
B
239 242parallel
Strand 8
B
217 220parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 338first strand
Strand 2
B
458 464parallel
Strand 3
B
431 434parallel
Strand 4
B
363 366parallel
Strand 5
B
413 416parallel
Strand 6
B
387 389parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 220first strand
Strand 2
C
239 242parallel
Strand 3
C
189 192parallel
Strand 4
C
263 266parallel
Strand 5
C
293 298parallel
Strand 6
C
153 156parallel
Strand 7
C
317 320parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il