Analysis of interatomic Contacts of Structural Units in PDB entry:
8ARP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ARP entry

There are 3 chains in PDB entry 8ARP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 53ARG 495
B
 ASN 53ARG 496
C
 TYR 52LYS 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are122 helices in PDB entry 8ARP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 67Right-handed alpha
Helix 2
AA2
A
68 70Right-handed 310
Helix 3
AA3
A
90 98Right-handed alpha
Helix 4
AA4
A
114 118Right-handed 310
Helix 5
AA5
A
121 132Right-handed alpha
Helix 6
AA6
A
137 148Right-handed alpha
Helix 7
AA7
A
162 176Right-handed alpha
Helix 8
AA8
A
195 207Right-handed alpha
Helix 9
AA9
A
226 234Right-handed alpha
Helix 10
AB1
A
243 253Right-handed alpha
Helix 11
AB2
A
268 275Right-handed alpha
Helix 12
AB3
A
277 285Right-handed alpha
Helix 13
AB4
A
286 288Right-handed 310
Helix 14
AB5
A
302 313Right-handed alpha
Helix 15
AB6
A
343 356Right-handed alpha
Helix 16
AB7
A
369 384Right-handed alpha
Helix 17
AB8
A
397 408Right-handed alpha
Helix 18
AB9
A
440 449Right-handed alpha
Helix 19
AC1
A
465 467Right-handed 310
Helix 20
AC2
A
468 482Right-handed alpha
Helix 21
AC3
A
487 494Right-handed 310
Helix 22
AC4
B
62 67Right-handed alpha
Helix 23
AC5
B
68 70Right-handed 310
Helix 24
AC6
B
81 85Right-handed 310
Helix 25
AC7
B
90 99Right-handed alpha
Helix 26
AC8
B
114 118Right-handed 310
Helix 27
AC9
B
121 129Right-handed alpha
Helix 28
AD1
B
137 149Right-handed alpha
Helix 29
AD2
B
164 177Right-handed alpha
Helix 30
AD3
B
195 207Right-handed alpha
Helix 31
AD4
B
228 234Right-handed alpha
Helix 32
AD5
B
243 252Right-handed alpha
Helix 33
AD6
B
268 275Right-handed alpha
Helix 34
AD7
B
277 286Right-handed alpha
Helix 35
AD8
B
302 313Right-handed alpha
Helix 36
AD9
B
343 358Right-handed alpha
Helix 37
AE1
B
370 381Right-handed alpha
Helix 38
AE2
B
397 408Right-handed alpha
Helix 39
AE3
B
440 449Right-handed alpha
Helix 40
AE4
B
465 467Right-handed 310
Helix 41
AE5
B
468 482Right-handed alpha
Helix 42
AE6
B
489 494Right-handed 310
Helix 43
AE7
C
62 67Right-handed alpha
Helix 44
AE8
C
68 70Right-handed 310
Helix 45
AE9
C
81 85Right-handed 310
Helix 46
AF1
C
90 99Right-handed alpha
Helix 47
AF2
C
121 131Right-handed alpha
Helix 48
AF3
C
137 148Right-handed alpha
Helix 49
AF4
C
164 177Right-handed alpha
Helix 50
AF5
C
195 208Right-handed alpha
Helix 51
AF6
C
228 234Right-handed alpha
Helix 52
AF7
C
243 252Right-handed alpha
Helix 53
AF8
C
268 275Right-handed alpha
Helix 54
AF9
C
277 286Right-handed alpha
Helix 55
AG1
C
304 313Right-handed alpha
Helix 56
AG2
C
343 356Right-handed alpha
Helix 57
AG3
C
372 381Right-handed alpha
Helix 58
AG4
C
382 384Right-handed 310
Helix 59
AG5
C
397 408Right-handed alpha
Helix 60
AG6
C
440 449Right-handed alpha
Helix 61
AG7
C
465 470Right-handed 310
Helix 62
AG8
C
471 480Right-handed alpha
Helix 63
AG9
C
490 494Right-handed 310
Helix 64
AH1
D
62 67Right-handed alpha
Helix 65
AH2
D
92 99Right-handed alpha
Helix 66
AH3
D
114 118Right-handed 310
Helix 67
AH4
D
121 131Right-handed alpha
Helix 68
AH5
D
137 148Right-handed alpha
Helix 69
AH6
D
164 177Right-handed alpha
Helix 70
AH7
D
195 207Right-handed alpha
Helix 71
AH8
D
229 235Right-handed alpha
Helix 72
AH9
D
243 252Right-handed alpha
Helix 73
AI1
D
268 275Right-handed alpha
Helix 74
AI2
D
277 286Right-handed alpha
Helix 75
AI3
D
302 313Right-handed alpha
Helix 76
AI4
D
343 356Right-handed alpha
Helix 77
AI5
D
372 384Right-handed alpha
Helix 78
AI6
D
397 408Right-handed alpha
Helix 79
AI7
D
440 449Right-handed alpha
Helix 80
AI8
D
465 467Right-handed 310
Helix 81
AI9
D
468 482Right-handed alpha
Helix 82
AJ1
E
62 67Right-handed alpha
Helix 83
AJ2
E
68 70Right-handed 310
Helix 84
AJ3
E
90 99Right-handed alpha
Helix 85
AJ4
E
114 118Right-handed 310
Helix 86
AJ5
E
121 132Right-handed alpha
Helix 87
AJ6
E
137 148Right-handed alpha
Helix 88
AJ7
E
164 177Right-handed alpha
Helix 89
AJ8
E
195 207Right-handed alpha
Helix 90
AJ9
E
225 234Right-handed alpha
Helix 91
AK1
E
243 252Right-handed alpha
Helix 92
AK2
E
268 275Right-handed alpha
Helix 93
AK3
E
277 286Right-handed alpha
Helix 94
AK4
E
302 313Right-handed alpha
Helix 95
AK5
E
343 356Right-handed alpha
Helix 96
AK6
E
370 384Right-handed alpha
Helix 97
AK7
E
397 408Right-handed alpha
Helix 98
AK8
E
440 449Right-handed alpha
Helix 99
AK9
E
465 470Right-handed 310
Helix 100
AL1
E
471 482Right-handed alpha
Helix 101
AL2
E
490 494Right-handed 310
Helix 102
AL3
F
62 67Right-handed alpha
Helix 103
AL4
F
68 70Right-handed 310
Helix 104
AL5
F
90 97Right-handed alpha
Helix 105
AL6
F
114 118Right-handed 310
Helix 106
AL7
F
121 131Right-handed alpha
Helix 107
AL8
F
137 148Right-handed alpha
Helix 108
AL9
F
164 177Right-handed alpha
Helix 109
AM1
F
195 207Right-handed alpha
Helix 110
AM2
F
225 228Right-handed 310
Helix 111
AM3
F
229 234Right-handed alpha
Helix 112
AM4
F
243 252Right-handed alpha
Helix 113
AM5
F
268 274Right-handed alpha
Helix 114
AM6
F
277 286Right-handed alpha
Helix 115
AM7
F
302 313Right-handed alpha
Helix 116
AM8
F
346 357Right-handed alpha
Helix 117
AM9
F
372 384Right-handed alpha
Helix 118
AN1
F
395 408Right-handed alpha
Helix 119
AN2
F
440 449Right-handed alpha
Helix 120
AN3
F
465 470Right-handed 310
Helix 121
AN4
F
471 482Right-handed alpha
Helix 122
AN5
F
490 494Right-handed 310
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There are 13 sheets in PDB entry 8ARP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
317 320anti-parallel
Strand 3
A
153 156parallel
Strand 4
A
293 298parallel
Strand 5
A
263 266parallel
Strand 6
A
189 192parallel
Strand 7
A
239 242parallel
Strand 8
A
217 220parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 338first strand
Strand 2
A
459 464parallel
Strand 3
A
432 434parallel
Strand 4
A
363 366parallel
Strand 5
A
413 416parallel
Strand 6
A
389 390parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 104first strand
Strand 2
B
317 320anti-parallel
Strand 3
B
153 156parallel
Strand 4
B
293 298parallel
Strand 5
B
263 267parallel
Strand 6
B
189 192parallel
Strand 7
B
239 242parallel
Strand 8
B
217 220parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 338first strand
Strand 2
B
459 464parallel
Strand 3
B
432 434parallel
Strand 4
B
363 367parallel
Strand 5
B
413 417parallel
Strand 6
B
387 390parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 104first strand
Strand 2
C
317 320anti-parallel
Strand 3
C
153 156parallel
Strand 4
C
293 298parallel
Strand 5
C
263 267parallel
Strand 6
C
189 192parallel
Strand 7
C
239 242parallel
Strand 8
C
217 220parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
333 334first strand
Strand 2
C
459 462parallel
Strand 3
C
432 434parallel
Strand 4
C
363 367parallel
Strand 5
C
413 417parallel
Strand 6
C
388 390parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
102 104first strand
Strand 2
D
317 320anti-parallel
Strand 3
D
153 156parallel
Strand 4
D
293 298parallel
Strand 5
D
263 266parallel
Strand 6
D
189 192parallel
Strand 7
D
239 242parallel
Strand 8
D
217 220parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
333 338first strand
Strand 2
D
459 464parallel
Strand 3
D
432 434parallel
Strand 4
D
363 367parallel
Strand 5
D
413 417parallel
Strand 6
D
389 390parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
103 104first strand
Strand 2
E
317 319anti-parallel
Strand 3
E
153 156parallel
Strand 4
E
293 298parallel
Strand 5
E
263 266parallel
Strand 6
E
189 192parallel
Strand 7
E
239 242parallel
Strand 8
E
217 220parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
333 338first strand
Strand 2
E
459 464parallel
Strand 3
E
431 434parallel
Strand 4
E
363 367parallel
Strand 5
E
413 417parallel
Strand 6
E
389 390parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
217 220first strand
Strand 2
F
239 242parallel
Strand 3
F
189 192parallel
Strand 4
F
263 266parallel
Strand 5
F
293 298parallel
Strand 6
F
153 156parallel
Strand 7
F
317 320parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
333 334first strand
Strand 2
F
459 464parallel
Strand 3
F
337 338parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
333 334first strand
Strand 2
F
459 464parallel
Strand 3
F
432 434parallel
Strand 4
F
363 366parallel
Strand 5
F
413 416parallel
Strand 6
F
387 390parallel
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