Analysis of interatomic Contacts of Structural Units in PDB entry:
8ARV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ARV entry

There are 2 chains in PDB entry 8ARV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 424LEU 678
B
 GLU 424ARG 677
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8ARV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
427 433Right-handed alpha
Helix 2
AA2
A
471 482Right-handed alpha
Helix 3
AA3
A
484 506Right-handed alpha
Helix 4
AA4
A
518 524Right-handed alpha
Helix 5
AA5
A
526 538Right-handed alpha
Helix 6
AA6
A
551 557Right-handed alpha
Helix 7
AA7
A
557 572Right-handed alpha
Helix 8
AA8
A
586 593Right-handed alpha
Helix 9
AA9
A
601 607Right-handed alpha
Helix 10
AB1
A
611 628Right-handed alpha
Helix 11
AB2
A
639 649Right-handed alpha
Helix 12
AB3
A
664 678Right-handed alpha
Helix 13
AB4
B
425 431Right-handed alpha
Helix 14
AB5
B
471 483Right-handed alpha
Helix 15
AB6
B
484 506Right-handed alpha
Helix 16
AB7
B
518 523Right-handed alpha
Helix 17
AB8
B
526 538Right-handed alpha
Helix 18
AB9
B
551 557Right-handed alpha
Helix 19
AC1
B
557 571Right-handed alpha
Helix 20
AC2
B
586 593Right-handed alpha
Helix 21
AC3
B
601 607Right-handed alpha
Helix 22
AC4
B
611 628Right-handed alpha
Helix 23
AC5
B
639 650Right-handed alpha
Helix 24
AC6
B
664 676Right-handed alpha
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There are 2 sheets in PDB entry 8ARV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 469first strand
Strand 2
A
452 464anti-parallel
Strand 3
A
512 516parallel
Strand 4
A
545 550parallel
Strand 5
A
574 580parallel
Strand 6
A
597 600parallel
Strand 7
A
631 635parallel
Strand 8
A
653 655parallel
Strand 9
A
438 447anti-parallel
Strand 10
A
452 464anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
468 470first strand
Strand 2
B
452 464anti-parallel
Strand 3
B
512 516parallel
Strand 4
B
545 550parallel
Strand 5
B
574 580parallel
Strand 6
B
597 600parallel
Strand 7
B
631 635parallel
Strand 8
B
653 655parallel
Strand 9
B
438 447anti-parallel
Strand 10
B
452 464anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il