Analysis of interatomic Contacts of Structural Units in PDB entry:
8AS8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AS8 entry

There are 5 chains in PDB entry 8AS8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 1095
B	MET 1	ALA 1095
C	SER 40	THR 234
D	SER 40	THR 234
E	MET 1	GLU 498

There are 92 helices in PDB entry 8AS8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed alpha
Helix 2	AA2	A	48	61	Right-handed alpha
Helix 3	AA3	A	67	72	Right-handed alpha
Helix 4	AA4	A	79	86	Right-handed alpha
Helix 5	AA5	A	135	139	Right-handed 310
Helix 6	AA6	A	152	175	Right-handed alpha
Helix 7	AA7	A	183	196	Right-handed alpha
Helix 8	AA8	A	198	208	Right-handed alpha
Helix 9	AA9	A	209	211	Right-handed 310
Helix 10	AB1	A	216	224	Right-handed alpha
Helix 11	AB2	A	233	283	Right-handed alpha
Helix 12	AB3	A	783	807	Right-handed alpha
Helix 13	AB4	A	810	814	Right-handed 310
Helix 14	AB5	A	818	820	Right-handed 310
Helix 15	AB6	A	821	835	Right-handed alpha
Helix 16	AB7	A	835	851	Right-handed alpha
Helix 17	AB8	A	856	882	Right-handed alpha
Helix 18	AB9	A	901	918	Right-handed alpha
Helix 19	AC1	A	924	944	Right-handed alpha
Helix 20	AC2	A	947	955	Right-handed alpha
Helix 21	AC3	A	956	959	Right-handed 310
Helix 22	AC4	A	985	1006	Right-handed alpha
Helix 23	AC5	A	1028	1042	Right-handed alpha
Helix 24	AC6	A	1054	1059	Right-handed alpha
Helix 25	AC7	A	1082	1094	Right-handed alpha
Helix 26	AC8	B	3	5	Right-handed 310
Helix 27	AC9	B	6	11	Right-handed alpha
Helix 28	AD1	B	48	61	Right-handed alpha
Helix 29	AD2	B	67	72	Right-handed alpha
Helix 30	AD3	B	79	85	Right-handed alpha
Helix 31	AD4	B	152	175	Right-handed alpha
Helix 32	AD5	B	183	196	Right-handed alpha
Helix 33	AD6	B	198	210	Right-handed alpha
Helix 34	AD7	B	216	223	Right-handed alpha
Helix 35	AD8	B	231	283	Right-handed alpha
Helix 36	AD9	B	783	808	Right-handed alpha
Helix 37	AE1	B	818	820	Right-handed 310
Helix 38	AE2	B	821	835	Right-handed alpha
Helix 39	AE3	B	835	851	Right-handed alpha
Helix 40	AE4	B	856	884	Right-handed alpha
Helix 41	AE5	B	901	919	Right-handed alpha
Helix 42	AE6	B	924	944	Right-handed alpha
Helix 43	AE7	B	947	955	Right-handed alpha
Helix 44	AE8	B	956	959	Right-handed 310
Helix 45	AE9	B	986	1006	Right-handed alpha
Helix 46	AF1	B	1028	1042	Right-handed alpha
Helix 47	AF2	B	1054	1061	Right-handed alpha
Helix 48	AF3	C	45	59	Right-handed alpha
Helix 49	AF4	C	66	76	Right-handed alpha
Helix 50	AF5	C	76	85	Right-handed alpha
Helix 51	AF6	C	113	117	Right-handed 310
Helix 52	AF7	C	126	146	Right-handed alpha
Helix 53	AF8	C	158	170	Right-handed alpha
Helix 54	AF9	C	174	192	Right-handed alpha
Helix 55	AG1	C	209	214	Right-handed alpha
Helix 56	AG2	C	215	234	Right-handed alpha
Helix 57	AG3	D	45	59	Right-handed alpha
Helix 58	AG4	D	66	76	Right-handed alpha
Helix 59	AG5	D	76	85	Right-handed alpha
Helix 60	AG6	D	86	88	Right-handed 310
Helix 61	AG7	D	126	148	Right-handed alpha
Helix 62	AG8	D	158	170	Right-handed alpha
Helix 63	AG9	D	174	192	Right-handed alpha
Helix 64	AH1	D	207	212	Right-handed 310
Helix 65	AH2	D	215	234	Right-handed alpha
Helix 66	AH3	E	2	19	Right-handed alpha
Helix 67	AH4	E	19	27	Right-handed alpha
Helix 68	AH5	E	29	44	Right-handed alpha
Helix 69	AH6	E	50	64	Right-handed alpha
Helix 70	AH7	E	76	91	Right-handed alpha
Helix 71	AH8	E	104	118	Right-handed alpha
Helix 72	AH9	E	129	144	Right-handed alpha
Helix 73	AI1	E	146	170	Right-handed alpha
Helix 74	AI2	E	177	194	Right-handed alpha
Helix 75	AI3	E	195	197	Right-handed 310
Helix 76	AI4	E	198	220	Right-handed alpha
Helix 77	AI5	E	224	232	Right-handed alpha
Helix 78	AI6	E	245	256	Right-handed alpha
Helix 79	AI7	E	258	273	Right-handed alpha
Helix 80	AI8	E	273	280	Right-handed alpha
Helix 81	AI9	E	281	290	Right-handed alpha
Helix 82	AJ1	E	290	318	Right-handed alpha
Helix 83	AJ2	E	321	339	Right-handed alpha
Helix 84	AJ3	E	340	342	Right-handed 310
Helix 85	AJ4	E	346	351	Right-handed alpha
Helix 86	AJ5	E	368	370	Right-handed 310
Helix 87	AJ6	E	378	391	Right-handed alpha
Helix 88	AJ7	E	398	406	Right-handed alpha
Helix 89	AJ8	E	409	425	Right-handed alpha
Helix 90	AJ9	E	429	437	Right-handed alpha
Helix 91	AK1	E	442	456	Right-handed alpha
Helix 92	AK2	E	488	495	Right-handed alpha

There are 13 sheets in PDB entry 8AS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	33	first strand
Strand 2	A	14	23	anti-parallel
Strand 3	A	106	116	anti-parallel
Strand 4	A	119	129	anti-parallel
Strand 5	A	140	146	anti-parallel
Strand 6	A	178	181	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1017	1021	first strand
Strand 2	A	1045	1049	parallel
Strand 3	A	39	42	parallel
Strand 4	A	1064	1070	parallel
Strand 5	A	1075	1081	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	892	895	first strand
Strand 2	A	963	967	anti-parallel
Strand 3	A	974	978	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	33	first strand
Strand 2	B	14	23	anti-parallel
Strand 3	B	107	116	anti-parallel
Strand 4	B	119	128	anti-parallel
Strand 5	B	140	146	anti-parallel
Strand 6	B	178	181	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1017	1020	first strand
Strand 2	B	1045	1050	parallel
Strand 3	B	39	42	parallel
Strand 4	B	1064	1071	parallel
Strand 5	B	1074	1084	anti-parallel
Strand 6	E	477	481	anti-parallel
Strand 7	E	468	471	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	893	895	first strand
Strand 2	B	963	967	anti-parallel
Strand 3	B	974	976	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	99	104	anti-parallel
Strand 3	C	89	94	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	203	205	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	99	103	anti-parallel
Strand 3	D	90	94	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	E	372	373	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	157	first strand
Strand 2	D	203	206	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	100	103	anti-parallel
Strand 3	E	94	97	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	461	465	first strand
Strand 2	E	483	484	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AS8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AS8