Analysis of interatomic Contacts of Structural Units in PDB entry:
8AS9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AS9 entry

There are 4 chains in PDB entry 8AS9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7ALA 127
B
 SER -4SER 128
D
 PRO 1ARG 51
C
 PRO 1354LEU 1659
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 8AS9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 28Right-handed alpha
Helix 2
AA2
A
46 54Right-handed alpha
Helix 3
AA3
A
54 63Right-handed alpha
Helix 4
AA4
A
64 67Right-handed 310
Helix 5
AA5
A
79 93Right-handed alpha
Helix 6
AA6
A
101 112Right-handed alpha
Helix 7
AA7
A
114 127Right-handed alpha
Helix 8
AA8
B
13 28Right-handed alpha
Helix 9
AA9
B
46 54Right-handed alpha
Helix 10
AB1
B
54 63Right-handed alpha
Helix 11
AB2
B
64 67Right-handed 310
Helix 12
AB3
B
79 93Right-handed alpha
Helix 13
AB4
B
101 112Right-handed alpha
Helix 14
AB5
B
114 126Right-handed alpha
Helix 15
AB6
D
7 9Right-handed 310
Helix 16
AB7
D
14 25Right-handed alpha
Helix 17
AB8
C
1356 1378Right-handed alpha
Helix 18
AB9
C
1388 1416Right-handed alpha
Helix 19
AC1
C
1418 1450Right-handed alpha
Helix 20
AC2
C
1465 1479Right-handed alpha
Helix 21
AC3
C
1480 1482Right-handed 310
Helix 22
AC4
C
1491 1514Right-handed alpha
Helix 23
AC5
C
1518 1545Right-handed alpha
Helix 24
AC6
C
1554 1576Right-handed alpha
Helix 25
AC7
C
1589 1623Right-handed alpha
Helix 26
AC8
C
1626 1654Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8AS9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
B
94 96anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
34 37anti-parallel
Strand 3
A
71 73parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
B
6 11anti-parallel
Strand 3
D
37 41parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
34 37anti-parallel
Strand 3
B
71 73parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
D
11 13anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il