Analysis of interatomic Contacts of Structural Units in PDB entry:
8ASD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ASD entry

There is 1 chain in PDB entry 8ASD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 1698

There are 84 helices in PDB entry 8ASD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	9	Right-handed alpha
Helix 2	AA2	A	71	76	Right-handed 310
Helix 3	AA3	A	77	84	Right-handed alpha
Helix 4	AA4	A	94	98	Right-handed 310
Helix 5	AA5	A	104	109	Right-handed 310
Helix 6	AA6	A	134	159	Right-handed alpha
Helix 7	AA7	A	184	209	Right-handed alpha
Helix 8	AA8	A	217	234	Right-handed alpha
Helix 9	AA9	A	237	245	Right-handed alpha
Helix 10	AB1	A	250	259	Right-handed alpha
Helix 11	AB2	A	262	285	Right-handed alpha
Helix 12	AB3	A	292	318	Right-handed alpha
Helix 13	AB4	A	352	357	Right-handed alpha
Helix 14	AB5	A	358	373	Right-handed alpha
Helix 15	AB6	A	385	392	Right-handed alpha
Helix 16	AB7	A	403	408	Right-handed 310
Helix 17	AB8	A	416	426	Right-handed alpha
Helix 18	AB9	A	436	447	Right-handed alpha
Helix 19	AC1	A	457	465	Right-handed alpha
Helix 20	AC2	A	477	492	Right-handed alpha
Helix 21	AC3	A	493	495	Right-handed 310
Helix 22	AC4	A	496	511	Right-handed alpha
Helix 23	AC5	A	512	532	Right-handed alpha
Helix 24	AC6	A	573	575	Right-handed 310
Helix 25	AC7	A	602	611	Right-handed alpha
Helix 26	AC8	A	611	627	Right-handed alpha
Helix 27	AC9	A	638	655	Right-handed alpha
Helix 28	AD1	A	656	671	Right-handed alpha
Helix 29	AD2	A	672	675	Right-handed 310
Helix 30	AD3	A	682	689	Right-handed 310
Helix 31	AD4	A	696	716	Right-handed alpha
Helix 32	AD5	A	742	750	Right-handed alpha
Helix 33	AD6	A	751	756	Right-handed 310
Helix 34	AD7	A	767	780	Right-handed alpha
Helix 35	AD8	A	802	822	Right-handed alpha
Helix 36	AD9	A	824	840	Right-handed alpha
Helix 37	AE1	A	842	846	Right-handed 310
Helix 38	AE2	A	855	859	Right-handed 310
Helix 39	AE3	A	860	864	Right-handed 310
Helix 40	AE4	A	874	885	Right-handed alpha
Helix 41	AE5	A	888	904	Right-handed alpha
Helix 42	AE6	A	926	945	Right-handed alpha
Helix 43	AE7	A	956	964	Right-handed alpha
Helix 44	AE8	A	964	974	Right-handed alpha
Helix 45	AE9	A	994	1006	Right-handed alpha
Helix 46	AF1	A	1007	1009	Right-handed 310
Helix 47	AF2	A	1010	1020	Right-handed alpha
Helix 48	AF3	A	1029	1038	Right-handed alpha
Helix 49	AF4	A	1046	1057	Right-handed alpha
Helix 50	AF5	A	1083	1109	Right-handed alpha
Helix 51	AF6	A	1138	1153	Right-handed alpha
Helix 52	AF7	A	1155	1160	Right-handed alpha
Helix 53	AF8	A	1161	1164	Right-handed 310
Helix 54	AF9	A	1194	1200	Right-handed alpha
Helix 55	AG1	A	1210	1228	Right-handed alpha
Helix 56	AG2	A	1231	1250	Right-handed alpha
Helix 57	AG3	A	1257	1267	Right-handed alpha
Helix 58	AG4	A	1270	1274	Right-handed 310
Helix 59	AG5	A	1280	1284	Right-handed 310
Helix 60	AG6	A	1288	1300	Right-handed alpha
Helix 61	AG7	A	1301	1315	Right-handed alpha
Helix 62	AG8	A	1330	1336	Right-handed alpha
Helix 63	AG9	A	1344	1354	Right-handed alpha
Helix 64	AH1	A	1360	1368	Right-handed alpha
Helix 65	AH2	A	1369	1373	Right-handed 310
Helix 66	AH3	A	1378	1391	Right-handed alpha
Helix 67	AH4	A	1392	1401	Right-handed alpha
Helix 68	AH5	A	1404	1411	Right-handed alpha
Helix 69	AH6	A	1412	1414	Right-handed 310
Helix 70	AH7	A	1424	1429	Right-handed alpha
Helix 71	AH8	A	1437	1448	Right-handed alpha
Helix 72	AH9	A	1449	1452	Right-handed 310
Helix 73	AI1	A	1457	1465	Right-handed alpha
Helix 74	AI2	A	1467	1479	Right-handed alpha
Helix 75	AI3	A	1512	1523	Right-handed alpha
Helix 76	AI4	A	1530	1545	Right-handed alpha
Helix 77	AI5	A	1551	1559	Right-handed alpha
Helix 78	AI6	A	1563	1572	Right-handed alpha
Helix 79	AI7	A	1595	1604	Right-handed alpha
Helix 80	AI8	A	1626	1638	Right-handed alpha
Helix 81	AI9	A	1642	1657	Right-handed alpha
Helix 82	AJ1	A	1669	1681	Right-handed alpha
Helix 83	AJ2	A	1687	1696	Right-handed alpha
Helix 84	AJ3	A	1757	1773	Right-handed alpha

There are 18 sheets in PDB entry 8ASD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	164	165	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	25	first strand
Strand 2	A	176	179	anti-parallel
Strand 3	A	168	172	anti-parallel
Strand 4	A	122	129	parallel
Strand 5	A	113	116	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	45	49	anti-parallel
Strand 3	A	66	70	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	577	578	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	411	first strand
Strand 2	A	541	545	anti-parallel
Strand 3	A	552	556	anti-parallel
Strand 4	A	564	571	anti-parallel
Strand 5	A	593	595	anti-parallel
Strand 6	A	588	590	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	411	first strand
Strand 2	A	541	545	anti-parallel
Strand 3	A	552	556	anti-parallel
Strand 4	A	564	571	anti-parallel
Strand 5	A	599	601	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	722	first strand
Strand 2	A	727	730	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	851	first strand
Strand 2	A	872	873	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	921	925	first strand
Strand 2	A	906	912	anti-parallel
Strand 3	A	1024	1027	parallel
Strand 4	A	1071	1074	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1117	1123	first strand
Strand 2	A	1128	1134	anti-parallel
Strand 3	A	978	984	anti-parallel
Strand 4	A	1172	1176	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1178	1181	first strand
Strand 2	A	1184	1187	anti-parallel
Strand 3	A	1190	1192	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1338	1340	first strand
Strand 2	A	1421	1423	anti-parallel
Strand 3	A	1435	1436	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1486	1488	first strand
Strand 2	A	1609	1611	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1496	1502	first strand
Strand 2	A	1579	1585	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1700	1705	first strand
Strand 2	A	1724	1728	anti-parallel
Strand 3	A	1733	1740	anti-parallel
Strand 4	A	1745	1752	anti-parallel
Strand 5	A	1774	1775	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1700	1705	first strand
Strand 2	A	1724	1728	anti-parallel
Strand 3	A	1733	1740	anti-parallel
Strand 4	A	1745	1752	anti-parallel
Strand 5	A	1804	1808	parallel
Strand 6	A	1788	1790	anti-parallel
Strand 7	A	1795	1797	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1709	1711	first strand
Strand 2	A	1717	1719	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1825	1829	first strand
Strand 2	A	1832	1840	anti-parallel
Strand 3	A	1843	1850	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ASD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ASD