Analysis of interatomic Contacts of Structural Units in PDB entry:
8ASJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ASJ entry

There are 8 chains in PDB entry 8ASJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 9	GLY 187
B	MET 1	SER 433
C	GLY 25	LYS 278
D	TRP 78	PHE 106
E	HIS 7	GLY 187
F	MET 1	TYR 432
G	GLY 25	LYS 278
H	TRP 79	GLY 105

There are 77 helices in PDB entry 8ASJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	37	Right-handed alpha
Helix 2	AA2	A	41	47	Right-handed alpha
Helix 3	AA3	A	78	84	Right-handed alpha
Helix 4	AA4	A	85	87	Right-handed 310
Helix 5	AA5	A	89	93	Right-handed 310
Helix 6	AA6	A	110	115	Right-handed alpha
Helix 7	AA7	B	13	21	Right-handed alpha
Helix 8	AA8	B	24	34	Right-handed alpha
Helix 9	AA9	B	42	45	Right-handed 310
Helix 10	AB1	B	46	66	Right-handed alpha
Helix 11	AB2	B	75	86	Right-handed alpha
Helix 12	AB3	B	89	119	Right-handed alpha
Helix 13	AB4	B	125	149	Right-handed alpha
Helix 14	AB5	B	152	167	Right-handed alpha
Helix 15	AB6	B	171	182	Right-handed alpha
Helix 16	AB7	B	187	220	Right-handed alpha
Helix 17	AB8	B	233	240	Right-handed alpha
Helix 18	AB9	B	244	270	Right-handed alpha
Helix 19	AC1	B	276	281	Right-handed 310
Helix 20	AC2	B	295	297	Right-handed 310
Helix 21	AC3	B	298	308	Right-handed alpha
Helix 22	AC4	B	312	322	Right-handed alpha
Helix 23	AC5	B	327	345	Right-handed alpha
Helix 24	AC6	B	345	350	Right-handed alpha
Helix 25	AC7	B	356	360	Right-handed 310
Helix 26	AC8	B	362	381	Right-handed alpha
Helix 27	AC9	B	388	406	Right-handed alpha
Helix 28	AD1	B	406	415	Right-handed alpha
Helix 29	AD2	B	423	432	Right-handed alpha
Helix 30	AD3	C	43	57	Right-handed alpha
Helix 31	AD4	C	58	61	Right-handed 310
Helix 32	AD5	C	68	74	Right-handed 310
Helix 33	AD6	C	81	90	Right-handed alpha
Helix 34	AD7	C	139	146	Right-handed alpha
Helix 35	AD8	C	148	158	Right-handed alpha
Helix 36	AD9	C	168	172	Right-handed 310
Helix 37	AE1	C	225	242	Right-handed alpha
Helix 38	AE2	C	244	276	Right-handed alpha
Helix 39	AE3	C	277	278	Right-handed 310
Helix 40	AE4	D	78	78	Right-handed 310
Helix 41	AE5	D	79	102	Right-handed alpha
Helix 42	AE6	E	11	37	Right-handed alpha
Helix 43	AE7	E	42	47	Right-handed 310
Helix 44	AE8	E	57	62	Right-handed alpha
Helix 45	AE9	E	80	86	Right-handed alpha
Helix 46	AF1	F	13	21	Right-handed alpha
Helix 47	AF2	F	24	34	Right-handed alpha
Helix 48	AF3	F	42	45	Right-handed 310
Helix 49	AF4	F	46	67	Right-handed alpha
Helix 50	AF5	F	75	86	Right-handed alpha
Helix 51	AF6	F	89	118	Right-handed alpha
Helix 52	AF7	F	125	149	Right-handed alpha
Helix 53	AF8	F	152	168	Right-handed alpha
Helix 54	AF9	F	172	182	Right-handed alpha
Helix 55	AG1	F	187	220	Right-handed alpha
Helix 56	AG2	F	233	240	Right-handed alpha
Helix 57	AG3	F	244	270	Right-handed alpha
Helix 58	AG4	F	276	281	Right-handed 310
Helix 59	AG5	F	295	297	Right-handed 310
Helix 60	AG6	F	298	308	Right-handed alpha
Helix 61	AG7	F	312	322	Right-handed alpha
Helix 62	AG8	F	327	345	Right-handed alpha
Helix 63	AG9	F	345	350	Right-handed alpha
Helix 64	AH1	F	356	360	Right-handed 310
Helix 65	AH2	F	362	382	Right-handed alpha
Helix 66	AH3	F	388	406	Right-handed alpha
Helix 67	AH4	F	406	415	Right-handed alpha
Helix 68	AH5	F	423	432	Right-handed alpha
Helix 69	AH6	G	43	57	Right-handed alpha
Helix 70	AH7	G	58	61	Right-handed 310
Helix 71	AH8	G	68	74	Right-handed 310
Helix 72	AH9	G	81	91	Right-handed alpha
Helix 73	AI1	G	139	146	Right-handed alpha
Helix 74	AI2	G	148	158	Right-handed alpha
Helix 75	AI3	G	225	242	Right-handed alpha
Helix 76	AI4	G	244	278	Right-handed alpha
Helix 77	AI5	H	81	105	Right-handed alpha

There are 12 sheets in PDB entry 8ASJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	54	first strand
Strand 2	A	184	187	anti-parallel
Strand 3	A	177	178	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	67	first strand
Strand 2	A	70	76	anti-parallel
Strand 3	A	122	126	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	155	156	anti-parallel
Strand 3	A	162	164	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	241	243	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	102	104	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	179	first strand
Strand 2	C	203	205	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	193	first strand
Strand 2	C	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	67	first strand
Strand 2	E	70	76	anti-parallel
Strand 3	E	122	126	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	148	first strand
Strand 2	E	155	157	anti-parallel
Strand 3	E	162	164	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	38	first strand
Strand 2	F	241	243	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	93	95	first strand
Strand 2	G	102	104	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	177	179	first strand
Strand 2	G	203	205	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ASJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ASJ